{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Parsing SwissLipids into a network for LipiNet" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import lipinet.databases # Import the module\n", "import importlib\n", "\n", "# Reload the module to ensure changes are picked up\n", "importlib.reload(lipinet)\n", "\n", "# Now can use the functions after reloading the module\n", "from lipinet.databases import get_prior_knowledge\n", "from lipinet.utils import split_and_expand_large, create_nodedf_from_edgedf, check_for_split_characters\n", "\n", "import pandas as pd" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Parsing the manual way\n", "\n", "LipiNet offers conventient functions to parse prior knowledge resources straight into networks. But to show what is happening behind the scenes, this notebook goes through the data and each of the steps. Which may also be particularly helpful to you if you need to customise the networks in a way that is not yet supported by LipiNet directly. " ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "File found locally at /Users/agjanyunlu/Documents/Metabolomics/lipinet/lipinet/.data/downloaded/swisslipids_lipids.tsv. Loading data...\n", "Before cleaning, number of values in lipid class column with trailing space: Lipid class*\n", "False 779171\n", "True 76\n", "Name: count, dtype: int64\n", "After cleaning, number of values in lipid class column with trailing space: Lipid class*\n", "False 779247\n", "Name: count, dtype: int64\n" ] }, { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "unknown" }, { "name": "Name", "rawType": "object", "type": "string" }, { "name": "Abbreviation*", "rawType": "object", "type": "unknown" }, { "name": "Synonyms*", "rawType": "object", "type": "unknown" }, { "name": "Lipid class*", "rawType": "object", "type": "unknown" }, { "name": "Parent", "rawType": "object", "type": "unknown" }, { "name": "Components*", "rawType": "object", "type": "unknown" }, { "name": "SMILES (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" 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"InChI=1S/C20H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-20(23)21-18-19-22/h9-10,22H,2-8,11-19H2,1H3,(H,21,23)/b10-9-", "InChIKey=BOWVQLFMWHZBEF-KTKRTIGZSA-N", "C20H39NO2", "0.0", "325.5292", "325.29808", "325.297531", "326.305356", "364.261238", "348.287301", "332.313535", "343.331905", "324.290803", "360.267481", "384.311932", "71466", null, "HMDB02088", "MNXM107386", "14634025 | 16527816 | 17015445 | 17626977 | 17655883 | 18227059 | 21562563 | 25596343 | 27637550" ], [ "18", "SLM:000000149", "Isomeric subspecies", "N-hexadecanoyl-ethanolamine", "NAE (16:0)", "hexadecanoyl-ethanolamide | N-hexadecanoyl ethanolamine", "SLM:000000378", null, null, "CCCCCCCCCCCCCCCC(=O)NCCO", "InChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)19-16-17-20/h20H,2-17H2,1H3,(H,19,21)", "InChIKey=HXYVTAGFYLMHSO-UHFFFAOYSA-N", "C18H37NO2", "0.0", "299.4919", "299.282429", "299.281881", "300.289706", "338.245588", "322.271651", "306.297885", "317.316255", "298.275153", "334.251831", "358.296282", "71464", null, "HMDB02100", "MNXM107548", "12824167 | 14634025 | 15655246 | 15760304 | 16527816 | 17015445 | 17655883 | 18227059 | 21562563 | 21801852 | 22825852 | 25423491 | 25596343 | 27637550" ], [ "19", "SLM:000000178", "Isomeric subspecies", "N-(docosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/22:0)", "Ceramide (iso-d17:1(4E)/22:0) | N-docosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000392021", "SLM:000000827 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C39H77NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-22-25-28-31-34-39(43)40-37(35-41)38(42)33-30-27-24-21-19-20-23-26-29-32-36(2)3/h30,33,36-38,41-42H,4-29,31-32,34-35H2,1-3H3,(H,40,43)/b33-30+/t37-,38+/m0/s1", "InChIKey=XMCZTIGIXKXPGG-KNEGYRQWSA-N", "C39H77NO3", "0.0", "608.0336", "607.590345", "607.589797", "608.597622", "646.553504", "630.579566", "614.605801", "625.624171", "606.583069", "642.559747", "666.604198", "71377", null, null, "MNXM107026", "19372430" ], [ "20", "SLM:000000179", "Isomeric subspecies", "N-(heneicosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/21:0)", "Ceramide (iso-d17:1(4E)/21:0) | N-henicosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000392020", "SLM:000001207 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C38H75NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-21-24-27-30-33-38(42)39-36(34-40)37(41)32-29-26-23-20-18-19-22-25-28-31-35(2)3/h29,32,35-37,40-41H,4-28,30-31,33-34H2,1-3H3,(H,39,42)/b32-29+/t36-,37+/m0/s1", "InChIKey=XTOGDASSFFGCNZ-DXPOGGQJSA-N", "C38H75NO3", "0.0", "594.007", "593.574695", "593.574147", "594.581972", "632.537854", "616.563916", "600.590151", "611.608521", "592.567419", "628.544097", "652.588548", "71375", null, null, "MNXM107036", "19372430" ], [ "21", "SLM:000000180", "Isomeric subspecies", "N-(2-hydroxyhenicosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/21:0-2OH)", "N-(2-hydroxyhenicosanoyl)-15-methylhexadecasphingosine", "SLM:000000002", null, null, "CCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)C=CCCCCCCCCCC(C)C", "InChI=1S/C38H75NO4/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-19-23-26-29-32-37(42)38(43)39-35(33-40)36(41)31-28-25-22-20-17-18-21-24-27-30-34(2)3/h28,31,34-37,40-42H,4-27,29-30,32-33H2,1-3H3,(H,39,43)/b31-28+/t35-,36+,37?/m0/s1", "MOSGEDXWYQEHCU-UGRYJNRPSA-N", "C38H75NO4", "0.0", "610.0064", null, null, null, null, null, null, null, null, null, null, "71378", null, null, null, "19372430" ], [ "22", "SLM:000000181", "Isomeric subspecies", "N-(2-hydroxydocosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/22:0-2OH)", "N-(2-hydroxydocosanoyl)-15-methylhexadecasphingosine", "SLM:000000002", null, null, "CCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)C=CCCCCCCCCCC(C)C", "InChI=1S/C39H77NO4/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-20-24-27-30-33-38(43)39(44)40-36(34-41)37(42)32-29-26-23-21-18-19-22-25-28-31-35(2)3/h29,32,35-38,41-43H,4-28,30-31,33-34H2,1-3H3,(H,40,44)/b32-29+/t36-,37+,38?/m0/s1", "HAYSYAZWAREGTL-RUOQPURXSA-N", "C39H77NO4", "0.0", "624.033", null, null, null, null, null, null, null, null, null, null, "71380", null, null, null, "19372430" ], [ "23", "SLM:000000182", "Isomeric subspecies", "N-(tetracosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/24:0)", "Ceramide (iso-d17:1(4E)/24:0) | N-tetracosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000392028", "SLM:000000414 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C41H81NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-24-27-30-33-36-41(45)42-39(37-43)40(44)35-32-29-26-23-21-22-25-28-31-34-38(2)3/h32,35,38-40,43-44H,4-31,33-34,36-37H2,1-3H3,(H,42,45)/b35-32+/t39-,40+/m0/s1", "InChIKey=TVDHQFWAJSGJQN-KBONVYKJSA-N", "C41H81NO3", "0.0", "636.0867", "635.621646", "635.621097", "636.628922", "674.584804", "658.610867", "642.637101", "653.655471", "634.614369", "670.591047", "694.635498", "71381", null, null, "MNXM107141", "19372430" ], [ "24", "SLM:000000183", "Isomeric subspecies", "N-(hexacosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/26:0)", "Ceramide (iso-d17:1(4E)/26:0) | N-hexacosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000392033", "SLM:000000539 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C43H85NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-26-29-32-35-38-43(47)44-41(39-45)42(46)37-34-31-28-25-23-24-27-30-33-36-40(2)3/h34,37,40-42,45-46H,4-33,35-36,38-39H2,1-3H3,(H,44,47)/b37-34+/t41-,42+/m0/s1", "InChIKey=NPJDYKPLWLEWOS-KTSAFCHVSA-N", "C43H85NO3", "0.0", "664.1399", "663.652946", "663.652397", "664.660222", "702.616104", "686.642167", "670.668401", "681.686771", "662.645669", "698.622347", "722.666799", "71385", null, null, "MNXM107064", "19372430" ], [ "25", "SLM:000000184", "Isomeric subspecies", "N-(2-hydroxyhexacosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/26:0-2OH)", "N-(2-hydroxyhexacosanoyl)-15-methylhexadecasphingosine", "SLM:000000002", null, null, "CCCCCCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)C=CCCCCCCCCCC(C)C", "InChI=1S/C43H85NO4/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-24-28-31-34-37-42(47)43(48)44-40(38-45)41(46)36-33-30-27-25-22-23-26-29-32-35-39(2)3/h33,36,39-42,45-47H,4-32,34-35,37-38H2,1-3H3,(H,44,48)/b36-33+/t40-,41+,42?/m0/s1", "FUNPOLWNRXNQQY-JBSSLLGASA-N", "C43H85NO4", "0.0", "680.1393", null, null, null, null, null, null, null, null, null, null, "71388", null, null, null, "19372430" ], [ "26", "SLM:000000185", "Isomeric subspecies", "N-(hexacosanoyl)-15-methylhexadecasphing-4-enine-1-phosphocholine", "SM(iso-d17:1(4E)/26:0)", "N-hexacosanoyl-15-methylhexadecasphing-4-enine-1-phosphocholine | Sphingomyelin (iso-d17:1(4E)/26:0)", "SLM:000000007", "SLM:000394465", "SLM:000000539 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C48H97N2O6P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-29-32-35-38-41-48(52)49-46(44-56-57(53,54)55-43-42-50(4,5)6)47(51)40-37-34-31-28-26-27-30-33-36-39-45(2)3/h37,40,45-47,51H,7-36,38-39,41-44H2,1-6H3,(H-,49,52,53,54)/b40-37+/t46-,47+/m0/s1", "InChIKey=JWWVBMRNPGAKSM-LWQSKWNHSA-N", "C48H97N2O6P", "0.0", "829.2673", "828.708425", "828.707877", "829.715702", "867.671584", "851.697646", "835.723881", "846.742251", null, "863.677827", "887.722278", "70938", null, null, "MNXM107065", "19372430" ], [ "27", "SLM:000000186", null, "N-(2-hydroxyheptacosanoyl)-15-methylhexadecasphing-4-enine-1-phosphocholine", null, null, "SLM:000000007", null, null, "CCCCCCCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)C=CCCCCCCCCCC(C)C", "InChI=1S/C49H99N2O7P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-28-32-35-38-41-48(53)49(54)50-46(44-58-59(55,56)57-43-42-51(4,5)6)47(52)40-37-34-31-29-26-27-30-33-36-39-45(2)3/h37,40,45-48,52-53H,7-36,38-39,41-44H2,1-6H3,(H-,50,54,55,56)/b40-37+/t46-,47+,48?/m0/s1", "HTFJKCHLCKQTKC-IVNVYFSQSA-N", "C49H99N2O7P", "0.0", "859.2933", null, null, null, null, null, null, null, null, null, null, "70951", null, null, null, null ], [ "28", "SLM:000000187", null, "N-2-hydroxy-henicosanoyl-15-methylhexadecasphing-4-enine-1-phosphocholine", null, null, "SLM:000000007", null, null, "CCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)C=CCCCCCCCCCC(C)C", "InChI=1S/C43H87N2O7P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-22-26-29-32-35-42(47)43(48)44-40(38-52-53(49,50)51-37-36-45(4,5)6)41(46)34-31-28-25-23-20-21-24-27-30-33-39(2)3/h31,34,39-42,46-47H,7-30,32-33,35-38H2,1-6H3,(H-,44,48,49,50)/b34-31+/t40-,41+,42?/m0/s1", "APDOHCXNXAIUDD-SNEAHRROSA-N", "C43H87N2O7P", "0.0", "775.1338", null, null, null, null, null, null, null, null, null, null, "70911", null, null, null, "19372430" ], [ "29", "SLM:000000188", null, "N-(2-hydroxydocosanoyl)-15-methylhexadecasphing-4-enine-1-phosphocholine", null, null, "SLM:000000007", null, null, "CCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)C=CCCCCCCCCCC(C)C", "InChI=1S/C44H89N2O7P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-23-27-30-33-36-43(48)44(49)45-41(39-53-54(50,51)52-38-37-46(4,5)6)42(47)35-32-29-26-24-21-22-25-28-31-34-40(2)3/h32,35,40-43,47-48H,7-31,33-34,36-39H2,1-6H3,(H-,45,49,50,51)/b35-32+/t41-,42+,43?/m0/s1", "NFVVZIPOGASQNY-LDQOJZKOSA-N", "C44H89N2O7P", "0.0", "789.1604", null, null, null, null, null, null, null, null, null, null, "70918", null, null, null, "19372430" ], [ "30", "SLM:000000189", null, "N-(2-hydroxyhenicosanoyl)-4-hydroxy-15-methylhexadecasphinganine-1-phosphocholine", null, null, "SLM:000000264", null, null, "CCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)[C@H](O)CCCCCCCCCCC(C)C", "InChI=1S/C43H89N2O8P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-25-28-31-34-41(47)43(49)44-39(37-53-54(50,51)52-36-35-45(4,5)6)42(48)40(46)33-30-27-24-22-21-23-26-29-32-38(2)3/h38-42,46-48H,7-37H2,1-6H3,(H-,44,49,50,51)/t39-,40+,41?,42-/m0/s1", "SSSWELGGYPDTBY-DGJMNPOFSA-N", "C43H89N2O8P", "0.0", "793.1491", null, null, null, null, null, null, null, null, null, null, "70920", null, null, null, "19372430" ], [ "31", "SLM:000000190", "Isomeric subspecies", "N-(2-hydroxytetracosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/24:0-2OH)", "N-(2-hydroxytetracosanoyl)-15-methylhexadecasphingosine", "SLM:000000002", null, null, "CCCCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)C=CCCCCCCCCCC(C)C", "InChI=1S/C41H81NO4/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-22-26-29-32-35-40(45)41(46)42-38(36-43)39(44)34-31-28-25-23-20-21-24-27-30-33-37(2)3/h31,34,37-40,43-45H,4-30,32-33,35-36H2,1-3H3,(H,42,46)/b34-31+/t38-,39+,40?/m0/s1", "AQFSCZQHGPCOII-XFNILPMGSA-N", "C41H81NO4", "0.0", "652.0861", null, null, null, null, null, null, null, null, null, null, "71384", null, null, null, "19372430" ], [ "32", "SLM:000000191", "Isomeric subspecies", "N-(2-hydroxypentacosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/25:0-2OH)", "N-(2-hydroxypentacosanoyl)-15-methylhexadecasphingosine", "SLM:000000002", null, null, "CCCCCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)C=CCCCCCCCCCC(C)C", "InChI=1S/C42H83NO4/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-23-27-30-33-36-41(46)42(47)43-39(37-44)40(45)35-32-29-26-24-21-22-25-28-31-34-38(2)3/h32,35,38-41,44-46H,4-31,33-34,36-37H2,1-3H3,(H,43,47)/b35-32+/t39-,40+,41?/m0/s1", "DNHYUZGAHLGOLG-FTDUBDKJSA-N", "C42H83NO4", "0.0", "666.1127", null, null, null, null, null, null, null, null, null, null, "71386", null, null, null, "19372430" ], [ "33", "SLM:000000193", "Isomeric subspecies", "5alpha-cholest-7-en-3beta-ol", null, null, "SLM:000501263", null, null, "[H][C@@]12CC=C3[C@]4([H])CC[C@]([H])([C@H](C)CCCC(C)C)[C@@]4(C)CC[C@]3([H])[C@@]1(C)CC[C@H](O)C2", "InChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h10,18-21,23-25,28H,6-9,11-17H2,1-5H3/t19-,20+,21+,23-,24+,25+,26+,27-/m1/s1", "InChIKey=IZVFFXVYBHFIHY-QLJXJWEDSA-N", "C27H46O", "0.0", "386.664", "386.354866", "386.354318", "387.362143", "425.318024", "409.344087", "393.370322", "404.388692", "385.34759", "421.324267", "445.368719", "17168", "LMST01010089", "HMDB01170", "MNXM810", "10344195 | 10786622 | 12133002 | 21813643 | 22505847 | 8798407 | 9894009" ], [ "34", "SLM:000000194", "Isomeric subspecies", "4alpha-methyl-5alpha-cholest-8(14)-en-3beta-ol", null, null, "SLM:000501263", null, null, "[H][C@@]1(CCC2=C3CC[C@@]4([H])[C@H](C)[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C", "InChI=1S/C28H48O/c1-18(2)8-7-9-19(3)22-12-13-24-21-10-11-23-20(4)26(29)15-17-28(23,6)25(21)14-16-27(22,24)5/h18-20,22-23,25-26,29H,7-17H2,1-6H3/t19-,20+,22-,23+,25+,26+,27-,28+/m1/s1", "InChIKey=UIPYFONRKZTOIY-GQZGFCDBSA-N", "C28H48O", "0.0", "400.691", "400.370516", "400.369968", "401.377793", "439.333674", "423.359737", "407.385972", "418.404342", "435.339917", "435.339917", "459.384369", "71581", null, null, "MNXM101996", "19531354" ], [ "35", "SLM:000000195", "Isomeric subspecies", "4?-methyl-5?-cholest-7-en-3?-ol", null, null, "SLM:000501263", null, null, "[H][C@@]1(CC[C@@]2([H])C3=CC[C@@]4([H])[C@H](C)[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C", "InChI=1S/C28H48O/c1-18(2)8-7-9-19(3)22-12-13-24-21-10-11-23-20(4)26(29)15-17-28(23,6)25(21)14-16-27(22,24)5/h10,18-20,22-26,29H,7-9,11-17H2,1-6H3/t19-,20+,22-,23+,24+,25+,26+,27-,28+/m1/s1", "InChIKey=LMYZQUNLYGJIHI-SPONXPENSA-N", "C28H48O", "0.0", "400.691", "400.370516", "400.369968", "401.377793", "439.333674", "423.359737", "407.385972", "418.404342", "435.339917", "435.339917", "459.384369", "18378", "LMST01010094", "HMDB11605", "MNXM4375", null ], [ "36", "SLM:000000196", "Isomeric subspecies", "N-(heneicosanoyl)-15-methylhexadecasphing-4-enine-1-phosphocholine", "SM(iso-d17:1(4E)/21:0)", "N-henicosanoyl-15-methylhexadecasphing-4-enine-1-phosphocholine | Sphingomyelin (iso-d17:1(4E)/21:0)", "SLM:000000007", "SLM:000394452", "SLM:000001207 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C43H87N2O6P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-24-27-30-33-36-43(47)44-41(39-51-52(48,49)50-38-37-45(4,5)6)42(46)35-32-29-26-23-21-22-25-28-31-34-40(2)3/h32,35,40-42,46H,7-31,33-34,36-39H2,1-6H3,(H-,44,47,48,49)/b35-32+/t41-,42+/m0/s1", "InChIKey=HMQRZNBWVNRNRL-UXROQNIDSA-N", "C43H87N2O6P", "0.0", "759.1344", 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"790.679651", null, "807.615226", "831.659678", "70910", null, null, "MNXM107027", "19372430" ], [ "38", "SLM:000000198", "Isomeric subspecies", "N-(tricosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/23:0)", "N-tricosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000488887", "SLM:000001128 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C40H79NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-23-26-29-32-35-40(44)41-38(36-42)39(43)34-31-28-25-22-20-21-24-27-30-33-37(2)3/h31,34,37-39,42-43H,4-30,32-33,35-36H2,1-3H3,(H,41,44)/b34-31+/t38-,39+/m0/s1", "InChIKey=QXQXRHLOSBYVGT-DGTAADTBSA-N", "C40H79NO3", "0.0", "622.0602", "621.605995", "621.605447", "622.613272", "660.569154", "644.595217", "628.621451", "639.639821", "620.598719", "656.575397", "680.619848", "71379", null, null, "MNXM107154", "19372430" ], [ "39", "SLM:000000199", null, "N-(2-hydroxyhexacosanoyl)-15-methylhexadecasphing-4-enine-1-phosphocholine", 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"284.294791", "265.253689", "301.230367", "325.274819", "73534", "LMFA05000217", null, "MNXM25507", "15220348" ], [ "47", "SLM:000000239", "Class", "1,2-diacyl-sn-glycero-3-phosphoethanolamine", "PE", "Phosphatidylethanolamine", "SLM:000055213", null, null, "[NH3+]CCOP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C7H12NO8PR2", "0.0", null, null, null, null, null, null, null, null, null, null, null, "64612", null, null, "MNXM32127", "15897609 | 16478722 | 17890783 | 18629440 | 18772128 | 19000777 | 19014349 | 19454763 | 19506037 | 20485265 | 20727985 | 24097981 | 2445736 | 24706822 | 8898203 | 9132017 | 9575223" ], [ "48", "SLM:000000240", "Class", "1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)", "PG", "Phosphatidylglycerol", "SLM:000055215", null, null, "OC[C@H](O)COP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C8H12O10PR2", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "64716", null, null, "MNXM101192", "16547353 | 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Lipid IDLevelNameAbbreviation*Synonyms*Lipid class*ParentComponents*SMILES (pH7.3)InChI (pH7.3)...Exact m/z of [M+Li]+Exact m/z of [M+NH4]+Exact m/z of [M-H]-Exact m/z of [M+Cl]-Exact m/z of [M+OAc]-CHEBILIPID MAPSHMDBMetaNetXPMID
0SLM:000000002ClassCeramide (iso-d17:1(4E))Cer(iso-d17:1(4E))N-acyl-15-methylhexadecasphing-4-enineSLM:000399814NaNNaNCC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO)NC([*])=OInChI=none...NaNNaNNaNNaNNaN70846NaNNaNMNXM97012| 11443131 | 14685263 | 18390550 | 21325339 |...
1SLM:000000003Isomeric subspecies15-methylhexadecasphing-4-enineNaNNaNSLM:000390097NaNNaNCC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@@H]([NH3+])COInChI=1S/C17H35NO2/c1-15(2)12-10-8-6-4-3-5-7-9......292.282235303.300605284.259503320.236181344.28063270771NaNNaNMNXM5778419372430
2SLM:000000006Isomeric subspecies15-methylhexadecasphinganineNaNNaNSLM:000390097NaNNaNCC(C)CCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])COInChI=1S/C17H37NO2/c1-15(2)12-10-8-6-4-3-5-7-9......294.297885305.316255286.275153322.251831346.29628270829NaNNaNMNXM9702919372430
3SLM:000000007ClassSphingomyelin (iso-d17:1(4E))SM(iso-d17:1(4E))N-acyl-15-methylhexadecasphing-4-enine-1-phosp...SLM:000001000NaNNaNCC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](COP([O-])(=O...InChI=none...NaNNaNNaNNaNNaN70775NaNNaNMNXM9711314685263 | 21926990 | 9603947
4SLM:000000035Isomeric subspeciessphinganineNaNNaNSLM:000390097NaNNaNCCCCCCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])COInChI=1S/C18H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12......308.313535319.331905300.290803336.267481360.31193257817LMSP01020001HMDB00269MNXM30210652340 | 10702247 | 10751414 | 10802064 | 10...
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779244SLM:000782324NaNapo carotenoidNaNNaNSLM:000508864NaNNaNNaNNaN...NaNNaNNaNNaNNaN53183NaNNaNNaNNaN
779245SLM:000782325NaNterpenoidNaNNaNSLM:000508864NaNNaNNaNNaN...NaNNaNNaNNaNNaN26873NaNNaNNaNNaN
779246SLM:000782326NaNC-45 isoprenoidNaNNaNSLM:000508864NaNNaNNaNNaN...NaNNaNNaNNaNNaN87168NaNNaNNaNNaN
779247SLM:000782327NaNgamma-lactoneNaNNaNSLM:000782238NaNNaNO1C(C(C(C1=O)*)*)*NaN...NaNNaNNaNNaNNaN37581NaNNaNNaNNaN
779248SLM:000782328NaNoxidized 2-acylglycerolNaNNaNSLM:000000355NaNNaNOCC(CO)OC(=O)*NaN...NaNNaNNaNNaNNaN167117NaNNaNNaNNaN
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779249 rows × 29 columns

\n", "
" ], "text/plain": [ " Lipid ID Level Name \\\n", "0 SLM:000000002 Class Ceramide (iso-d17:1(4E)) \n", "1 SLM:000000003 Isomeric subspecies 15-methylhexadecasphing-4-enine \n", "2 SLM:000000006 Isomeric subspecies 15-methylhexadecasphinganine \n", "3 SLM:000000007 Class Sphingomyelin (iso-d17:1(4E)) \n", "4 SLM:000000035 Isomeric subspecies sphinganine \n", "... ... ... ... \n", "779244 SLM:000782324 NaN apo carotenoid \n", "779245 SLM:000782325 NaN terpenoid \n", "779246 SLM:000782326 NaN C-45 isoprenoid \n", "779247 SLM:000782327 NaN gamma-lactone \n", "779248 SLM:000782328 NaN oxidized 2-acylglycerol \n", "\n", " Abbreviation* Synonyms* \\\n", "0 Cer(iso-d17:1(4E)) N-acyl-15-methylhexadecasphing-4-enine \n", "1 NaN NaN \n", "2 NaN NaN \n", "3 SM(iso-d17:1(4E)) N-acyl-15-methylhexadecasphing-4-enine-1-phosp... \n", "4 NaN NaN \n", "... ... ... \n", "779244 NaN NaN \n", "779245 NaN NaN \n", "779246 NaN NaN \n", "779247 NaN NaN \n", "779248 NaN NaN \n", "\n", " Lipid class* Parent Components* \\\n", "0 SLM:000399814 NaN NaN \n", "1 SLM:000390097 NaN NaN \n", "2 SLM:000390097 NaN NaN \n", "3 SLM:000001000 NaN NaN \n", "4 SLM:000390097 NaN NaN \n", "... ... ... ... \n", "779244 SLM:000508864 NaN NaN \n", "779245 SLM:000508864 NaN NaN \n", "779246 SLM:000508864 NaN NaN \n", "779247 SLM:000782238 NaN NaN \n", "779248 SLM:000000355 NaN NaN \n", "\n", " SMILES (pH7.3) \\\n", "0 CC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO)NC([*])=O \n", "1 CC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@@H]([NH3+])CO \n", "2 CC(C)CCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])CO \n", "3 CC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](COP([O-])(=O... \n", "4 CCCCCCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])CO \n", "... ... \n", "779244 NaN \n", "779245 NaN \n", "779246 NaN \n", "779247 O1C(C(C(C1=O)*)*)* \n", "779248 OCC(CO)OC(=O)* \n", "\n", " InChI (pH7.3) ... \\\n", "0 InChI=none ... \n", "1 InChI=1S/C17H35NO2/c1-15(2)12-10-8-6-4-3-5-7-9... ... \n", "2 InChI=1S/C17H37NO2/c1-15(2)12-10-8-6-4-3-5-7-9... ... \n", "3 InChI=none ... \n", "4 InChI=1S/C18H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12... ... \n", "... ... ... \n", "779244 NaN ... \n", "779245 NaN ... \n", "779246 NaN ... \n", "779247 NaN ... \n", "779248 NaN ... \n", "\n", " Exact m/z of [M+Li]+ Exact m/z of [M+NH4]+ Exact m/z of [M-H]- \\\n", "0 NaN NaN NaN \n", "1 292.282235 303.300605 284.259503 \n", "2 294.297885 305.316255 286.275153 \n", "3 NaN NaN NaN \n", "4 308.313535 319.331905 300.290803 \n", "... ... ... ... \n", "779244 NaN NaN NaN \n", "779245 NaN NaN NaN \n", "779246 NaN NaN NaN \n", "779247 NaN NaN NaN \n", "779248 NaN NaN NaN \n", "\n", " Exact m/z of [M+Cl]- Exact m/z of [M+OAc]- CHEBI LIPID MAPS \\\n", "0 NaN NaN 70846 NaN \n", "1 320.236181 344.280632 70771 NaN \n", "2 322.251831 346.296282 70829 NaN \n", "3 NaN NaN 70775 NaN \n", "4 336.267481 360.311932 57817 LMSP01020001 \n", "... ... ... ... ... \n", "779244 NaN NaN 53183 NaN \n", "779245 NaN NaN 26873 NaN \n", "779246 NaN NaN 87168 NaN \n", "779247 NaN NaN 37581 NaN \n", "779248 NaN NaN 167117 NaN \n", "\n", " HMDB MetaNetX \\\n", "0 NaN MNXM97012 \n", "1 NaN MNXM57784 \n", "2 NaN MNXM97029 \n", "3 NaN MNXM97113 \n", "4 HMDB00269 MNXM302 \n", "... ... ... \n", "779244 NaN NaN \n", "779245 NaN NaN \n", "779246 NaN NaN \n", "779247 NaN NaN \n", "779248 NaN NaN \n", "\n", " PMID \n", "0 | 11443131 | 14685263 | 18390550 | 21325339 |... \n", "1 19372430 \n", "2 19372430 \n", "3 14685263 | 21926990 | 9603947 \n", "4 10652340 | 10702247 | 10751414 | 10802064 | 10... \n", "... ... \n", "779244 NaN \n", "779245 NaN \n", "779246 NaN \n", "779247 NaN \n", "779248 NaN \n", "\n", "[779249 rows x 29 columns]" ] }, "execution_count": 2, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids = get_prior_knowledge('swisslipids', verbose=True)\n", "df_swisslipids" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "If we take a closer look into the data, especially the `Lipid class*` column, we will see that some of the values have multiple entries. For example Ceramide phosphoinositol is a Class level entry that itself belongs to both the SLM:000000834 and SLM:000399815 classes." ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "unknown" }, { "name": "Name", "rawType": "object", "type": "string" }, { "name": "Abbreviation*", "rawType": "object", "type": "unknown" }, { "name": "Synonyms*", "rawType": "object", "type": "unknown" }, { "name": "Lipid class*", "rawType": "object", "type": "string" }, { "name": "Parent", "rawType": "object", "type": "unknown" }, { "name": "Components*", "rawType": "object", "type": "unknown" }, { "name": "SMILES (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Cl]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+OAc]- ", "rawType": "float64", "type": "float" }, { "name": "CHEBI", "rawType": "object", "type": "unknown" }, { "name": "LIPID MAPS", "rawType": "object", "type": "unknown" }, { "name": "HMDB", "rawType": "object", "type": "unknown" }, { "name": "MetaNetX", "rawType": "object", "type": "unknown" }, { "name": "PMID", "rawType": "object", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "cf430f42-141c-4afd-aaf4-3980d59d7fef", "rows": [ [ "142", "SLM:000000392", "Class", "Ceramide phosphoinositol", "IPC", "Inositol-1-phosphoceramide", "SLM:000000834 | SLM:000399815", null, null, "O[C@H]([*])[C@H](COP([O-])(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O)NC([*])=O", "InChI=none", null, "C10H17NO11PR2", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "64916", null, null, null, "10888667 | 20727985" ], [ "234", "SLM:000000509", "Isomeric subspecies", "All-trans-retinyl hexadecanoate", null, "all-trans-retinyl palmitate", "SLM:000000982 | SLM:000508854", null, null, "CCCCCCCCCCCCCCCC(=O)OCC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C", "InChI=1S/C36H60O2/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-25-35(37)38-30-28-32(3)23-20-22-31(2)26-27-34-33(4)24-21-29-36(34,5)6/h20,22-23,26-28H,7-19,21,24-25,29-30H2,1-6H3/b23-20+,27-26+,31-22+,32-28+", "VYGQUTWHTHXGQB-FFHKNEKCSA-N", "C36H60O2", "0.0", "524.8604", null, null, null, null, null, null, null, null, null, null, "17616", null, "HMDB03648", null, "10769148 | 10819989 | 12230550 | 15550674 | 15834126 | 15955102 | 16106050 | 16214399 | 16787387 | 17158102 | 17603008 | 20628054 | 25112876 | 9162045 | 9920938" ], [ "315", "SLM:000000612", null, "tetracosenoyl-CoA", null, null, "SLM:000390051 | SLM:000782334", null, null, "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O", null, null, "C45H76N7O17P3S", "-4.0", "1112.108", null, null, null, null, null, null, null, null, null, null, "74146", null, null, null, "18541923 | 20110363 | 20937905" ], [ "317", "SLM:000000614", null, "hexacosenoyl-CoA", null, null, "SLM:000390051 | SLM:000782334", null, null, "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O", null, null, "C47H80N7O17P3S", "-4.0", "1140.161", null, null, null, null, null, null, null, null, null, null, "74161", null, null, null, "18165233" ], [ "319", "SLM:000000621", null, "2-hydroxy-tetracosenoyl-CoA", null, null, "SLM:000390051 | SLM:000782334", null, null, "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C(O)[*]", null, null, "C45H76N7O18P3S", "-4.0", "1128.10952", null, null, null, null, null, null, null, null, null, null, "74215", null, null, null, "18541923" ], [ "512", "SLM:000000835", "Class", "Ceramide phosphomannosylinositol", "MIPC", "Mannosylinositol-1-phosphoceramide", "SLM:000000834 | SLM:000399815", null, null, "OC[C@H]1OC(O[C@@H]2[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)[C@H]2OP([O-])(=O)OC[C@H](NC([*])=O)[C@H](O)[*])[C@@H](O)[C@@H](O)[C@@H]1O", "InChI=none", null, "C16H27NO16PR2", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "64997", null, null, null, "10931938 | 11006294 | 20727985 | 22322963" ], [ "513", "SLM:000000836", "Class", "Ins-1-P-6-Man-1-2-Ins-1-P-Cer", "M(IP)2C", "Inositol phosphomannosylinositol-1-phosphoceramide | mannosyl diphosphorylinositol ceramide", "SLM:000000834 | SLM:000399815", null, null, "O[C@H]([*])[C@H](COP([O-])(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1OC1O[C@H](COP([O-])(=O)O[C@H]2[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@@H]1O)NC([*])=O", "InChI=none", null, "C22H37NO24P2R2", "-2.0", null, null, null, null, null, null, null, null, null, null, null, "74997", null, null, null, "10931938 | 20727985 | 22322963" ], [ "550", "SLM:000000880", "Class", "Lactosyl ceramide (d18:1(4E))", "LacCer(d18:1(4E))", "N-acyl-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1)-sphing-4-enine", "SLM:000399708 | SLM:000501064", null, null, "CCCCCCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)NC([*])=O", "InChI=none", null, "C31H56NO13R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "17950", null, null, "MNXM527858", "10092602 | 10320813 | 10405317 | 10748143 | 10838196 | 10854427 | 10854428 | 11283017 | 11384981 | 12629211 | 15847605 | 16934889 | 21057870 | 21675735 | 23801329 | 30114188 | 3140234 | 8804427 | 8830034 | 9593693 | 9822625 | 9875239" ], [ "569", "SLM:000000926", "Class", "Galactosyl ceramide (d18:1(4E))", "GalCer(d18:1(4E))", "Galactosyl ceramide(d18:1(4E)) | N-acyl-1-O-beta-D-galactosyl-sphing-4-enine", "SLM:000389698 | SLM:000399707", null, null, "C(=C/CCCCCCCCCCCCC)[C@@H](O)[C@@H](NC(=O)*)CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O", null, null, "C25H46NO8R", "0.0", "488.636", null, null, null, null, null, null, null, null, null, null, "18390", null, null, "MNXM521765", "16934889 | 23532839 | 24294900 | 8399327 | 8713090 | 8830034" ], [ "610", "SLM:000001000", "Class", "Sphingomyelin", "SM", "Ceramide phosphocholine", "SLM:000000834 | SLM:000399815", null, null, "C[N+](C)(C)CCOP([O-])(=O)OC[C@H](NC([*])=O)[C@H](O)[*]", "InChI=none", null, null, "0.0", null, null, null, null, null, null, null, null, null, null, null, "64583", null, null, "MNXM354", "14741383 | 16702602 | 7654206" ], [ "611", "SLM:000001005", "Class", "Sulfogalactosyl ceramide (d18:1(4E))", "SulfoGalCer(d18:1(4E))", "N-acyl-1-O-beta-D-(3-O-sulfo)-galactosyl-sphing-4-enine", "SLM:000399709 | SLM:000501351", null, null, "CCCCCCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OS([O-])(=O)=O)[C@H]1O)NC([*])=O", "InChI=none", null, "C25H45NO11SR", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "75956", null, null, "MNXM683216", "24294900 | 8830034" ], [ "644", "SLM:000001051", null, "2-methylacetoacetyl-CoA", null, null, "SLM:000000726 | SLM:000782258", null, null, "CC(C(C)=O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12", "InChI=1S/C26H42N7O18P3S/c1-13(14(2)34)25(39)55-8-7-28-16(35)5-6-29-23(38)20(37)26(3,4)10-48-54(45,46)51-53(43,44)47-9-15-19(50-52(40,41)42)18(36)24(49-15)33-12-32-17-21(27)30-11-31-22(17)33/h11-13,15,18-20,24,36-37H,5-10H2,1-4H3,(H,28,35)(H,29,38)(H,43,44)(H,45,46)(H2,27,30,31)(H2,40,41,42)/p-4/t13?,15-,18-,19-,20+,24-/m1/s1", "NHNODHRSCRALBF-NQNBQJKNSA-J", "C26H38N7O18P3S", "-4.0", "861.602", null, null, null, null, null, null, null, null, null, null, "57335", null, null, null, "17371050 | 19706438" ], [ "387295", "SLM:000389357", null, "nonanoyl-CoA", null, null, "SLM:000390052 | SLM:000782335", null, null, "CCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12", "InChI=1S/C30H52N7O17P3S/c1-4-5-6-7-8-9-10-21(39)58-14-13-32-20(38)11-12-33-28(42)25(41)30(2,3)16-51-57(48,49)54-56(46,47)50-15-19-24(53-55(43,44)45)23(40)29(52-19)37-18-36-22-26(31)34-17-35-27(22)37/h17-19,23-25,29,40-41H,4-16H2,1-3H3,(H,32,38)(H,33,42)(H,46,47)(H,48,49)(H2,31,34,35)(H2,43,44,45)/p-4/t19-,23-,24-,25+,29-/m1/s1", "WLDUTYVSAGSKIV-FUEUKBNZSA-J", "C30H48N7O17P3S", "-4.0", "903.725", null, null, null, null, null, null, null, null, null, null, "76291", null, null, null, "16020546 | 18267944" ], [ "387339", "SLM:000389419", "Isomeric subspecies", "All-trans-retinyl (9Z)-octadecenoate", null, "all-trans-retinyl oleate", "SLM:000000982 | SLM:000508854", null, null, "CCCCCCCCC=C/CCCCCCCC(=O)OCC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C", "InChI=1S/C38H62O2/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-27-37(39)40-32-30-34(3)25-22-24-33(2)28-29-36-35(4)26-23-31-38(36,5)6/h14-15,22,24-25,28-30H,7-13,16-21,23,26-27,31-32H2,1-6H3/b15-14-,25-22+,29-28+,33-24+,34-30+", "FXKDHZXYYBPLHI-TUTABMRPSA-N", "C38H62O2", "0.0", "550.8977", null, null, null, null, null, null, null, null, null, null, "70760", null, null, null, "17603008" ], [ "387343", "SLM:000389425", "Class", "1-phosphosphingoid base", null, null, "SLM:000399815 | SLM:000501452", null, null, "[NH3+][C@@H](COP([O-])([O-])=O)[C@H](O)[*]", "InChI=none", null, "C3H8NO5PR", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "76941", null, null, "MNXM453139", null ], [ "387370", "SLM:000389470", null, "(2E)-pristenoyl-CoA", null, null, "SLM:000000814 | SLM:000782258", null, null, "CC(C)CCCC(C)CCCC(C)CCC=C(/C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12", 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Lipid IDLevelNameAbbreviation*Synonyms*Lipid class*ParentComponents*SMILES (pH7.3)InChI (pH7.3)...Exact m/z of [M+Li]+Exact m/z of [M+NH4]+Exact m/z of [M-H]-Exact m/z of [M+Cl]-Exact m/z of [M+OAc]-CHEBILIPID MAPSHMDBMetaNetXPMID
142SLM:000000392ClassCeramide phosphoinositolIPCInositol-1-phosphoceramideSLM:000000834 | SLM:000399815NaNNaNO[C@H]([*])[C@H](COP([O-])(=O)O[C@H]1[C@H](O)[...InChI=none...NaNNaNNaNNaNNaN64916NaNNaNNaN10888667 | 20727985
234SLM:000000509Isomeric subspeciesAll-trans-retinyl hexadecanoateNaNall-trans-retinyl palmitateSLM:000000982 | SLM:000508854NaNNaNCCCCCCCCCCCCCCCC(=O)OCC=C(C)C=CC=C(C)C=CC1=C(C...InChI=1S/C36H60O2/c1-7-8-9-10-11-12-13-14-15-1......NaNNaNNaNNaNNaN17616NaNHMDB03648NaN10769148 | 10819989 | 12230550 | 15550674 | 15...
315SLM:000000612NaNtetracosenoyl-CoANaNNaNSLM:000390051 | SLM:000782334NaNNaNCC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](...NaN...NaNNaNNaNNaNNaN74146NaNNaNNaN18541923 | 20110363 | 20937905
317SLM:000000614NaNhexacosenoyl-CoANaNNaNSLM:000390051 | SLM:000782334NaNNaNCC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](...NaN...NaNNaNNaNNaNNaN74161NaNNaNNaN18165233
319SLM:000000621NaN2-hydroxy-tetracosenoyl-CoANaNNaNSLM:000390051 | SLM:000782334NaNNaNCC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](...NaN...NaNNaNNaNNaNNaN74215NaNNaNNaN18541923
..................................................................
755324SLM:000758294ClassGlobosideGloboGlobo-seriesSLM:000000834 | SLM:000399813NaNNaNNaNNaN...NaNNaNNaNNaNNaN61360NaNNaNNaNNaN
755325SLM:000758295ClassIsoglobosideIsogloboIsoglobo-seriesSLM:000000834 | SLM:000399813NaNNaNNaNNaN...NaNNaNNaNNaNNaN78257NaNNaNNaNNaN
779141SLM:000782221NaNResolvin ERvENaNSLM:000501332 | SLM:000508853NaNNaNNaNInChI=none...NaNNaNNaNNaNNaNNaNLMFA0314NaNNaNNaN
779142SLM:000782222NaNResolvin DRvDNaNSLM:000501331 | SLM:000508853NaNNaNNaNInChI=none...NaNNaNNaNNaNNaNNaNLMFA0403NaNNaNNaN
779157SLM:000782237NaNan N-(omega-(9Z,12Z-octadecadienoyloxy)-ultra-...NaNNaNSLM:000000413 | SLM:000782274NaNNaN[C@H]([C@@H](/C=C/CCCCCCCCCCCCC)O)(NC(=O)*COC(...NaN...NaNNaNNaNNaNNaN157662NaNNaNNaNNaN
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119 rows × 29 columns

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" ], "text/plain": [ " Lipid ID Level \\\n", "142 SLM:000000392 Class \n", "234 SLM:000000509 Isomeric subspecies \n", "315 SLM:000000612 NaN \n", "317 SLM:000000614 NaN \n", "319 SLM:000000621 NaN \n", "... ... ... \n", "755324 SLM:000758294 Class \n", "755325 SLM:000758295 Class \n", "779141 SLM:000782221 NaN \n", "779142 SLM:000782222 NaN \n", "779157 SLM:000782237 NaN \n", "\n", " Name Abbreviation* \\\n", "142 Ceramide phosphoinositol IPC \n", "234 All-trans-retinyl hexadecanoate NaN \n", "315 tetracosenoyl-CoA NaN \n", "317 hexacosenoyl-CoA NaN \n", "319 2-hydroxy-tetracosenoyl-CoA NaN \n", "... ... ... \n", "755324 Globoside Globo \n", "755325 Isogloboside Isoglobo \n", "779141 Resolvin E RvE \n", "779142 Resolvin D RvD \n", "779157 an N-(omega-(9Z,12Z-octadecadienoyloxy)-ultra-... NaN \n", "\n", " Synonyms* Lipid class* Parent \\\n", "142 Inositol-1-phosphoceramide SLM:000000834 | SLM:000399815 NaN \n", "234 all-trans-retinyl palmitate SLM:000000982 | SLM:000508854 NaN \n", "315 NaN SLM:000390051 | SLM:000782334 NaN \n", "317 NaN SLM:000390051 | SLM:000782334 NaN \n", "319 NaN SLM:000390051 | SLM:000782334 NaN \n", "... ... ... ... \n", "755324 Globo-series SLM:000000834 | SLM:000399813 NaN \n", "755325 Isoglobo-series SLM:000000834 | SLM:000399813 NaN \n", "779141 NaN SLM:000501332 | SLM:000508853 NaN \n", "779142 NaN SLM:000501331 | SLM:000508853 NaN \n", "779157 NaN SLM:000000413 | SLM:000782274 NaN \n", "\n", " Components* SMILES (pH7.3) \\\n", "142 NaN O[C@H]([*])[C@H](COP([O-])(=O)O[C@H]1[C@H](O)[... \n", "234 NaN CCCCCCCCCCCCCCCC(=O)OCC=C(C)C=CC=C(C)C=CC1=C(C... \n", "315 NaN CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](... \n", "317 NaN CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](... \n", "319 NaN CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](... \n", "... ... ... \n", "755324 NaN NaN \n", "755325 NaN NaN \n", "779141 NaN NaN \n", "779142 NaN NaN \n", "779157 NaN [C@H]([C@@H](/C=C/CCCCCCCCCCCCC)O)(NC(=O)*COC(... \n", "\n", " InChI (pH7.3) ... \\\n", "142 InChI=none ... \n", "234 InChI=1S/C36H60O2/c1-7-8-9-10-11-12-13-14-15-1... ... \n", "315 NaN ... \n", "317 NaN ... \n", "319 NaN ... \n", "... ... ... \n", "755324 NaN ... \n", "755325 NaN ... \n", "779141 InChI=none ... \n", "779142 InChI=none ... \n", "779157 NaN ... \n", "\n", " Exact m/z of [M+Li]+ Exact m/z of [M+NH4]+ Exact m/z of [M-H]- \\\n", "142 NaN NaN NaN \n", "234 NaN NaN NaN \n", "315 NaN NaN NaN \n", "317 NaN NaN NaN \n", "319 NaN NaN NaN \n", "... ... ... ... \n", "755324 NaN NaN NaN \n", "755325 NaN NaN NaN \n", "779141 NaN NaN NaN \n", "779142 NaN NaN NaN \n", "779157 NaN NaN NaN \n", "\n", " Exact m/z of [M+Cl]- Exact m/z of [M+OAc]- CHEBI LIPID MAPS \\\n", "142 NaN NaN 64916 NaN \n", "234 NaN NaN 17616 NaN \n", "315 NaN NaN 74146 NaN \n", "317 NaN NaN 74161 NaN \n", "319 NaN NaN 74215 NaN \n", "... ... ... ... ... \n", "755324 NaN NaN 61360 NaN \n", "755325 NaN NaN 78257 NaN \n", "779141 NaN NaN NaN LMFA0314 \n", "779142 NaN NaN NaN LMFA0403 \n", "779157 NaN NaN 157662 NaN \n", "\n", " HMDB MetaNetX PMID \n", "142 NaN NaN 10888667 | 20727985 \n", "234 HMDB03648 NaN 10769148 | 10819989 | 12230550 | 15550674 | 15... \n", "315 NaN NaN 18541923 | 20110363 | 20937905 \n", "317 NaN NaN 18165233 \n", "319 NaN NaN 18541923 \n", "... ... ... ... \n", "755324 NaN NaN NaN \n", "755325 NaN NaN NaN \n", "779141 NaN NaN NaN \n", "779142 NaN NaN NaN \n", "779157 NaN NaN NaN \n", "\n", "[119 rows x 29 columns]" ] }, "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids.dropna(subset='Lipid class*')[df_swisslipids['Lipid class*'].dropna().str.contains('|', regex=False)]" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "What about other IDs?" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Checking split characters (|) in Lipid ID\n", "No rows found\n", "\n", "Checking split characters (|) in Level\n", "No rows found\n", "\n", "Checking split characters (|) in Name\n", "No rows found\n", "\n", "Checking split characters (|) in Abbreviation*\n", "Found 9768 rows with split characters\n" ] }, { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "string" }, { "name": "Name", "rawType": "object", "type": "string" }, { "name": "Abbreviation*", "rawType": "object", "type": "string" }, { "name": "Synonyms*", "rawType": "object", "type": "unknown" }, { "name": "Lipid class*", "rawType": "object", "type": "string" }, { "name": "Parent", "rawType": "object", "type": "unknown" }, { "name": "Components*", "rawType": "object", "type": "unknown" }, { "name": "SMILES (pH7.3)", "rawType": "object", "type": "string" }, { "name": "InChI (pH7.3)", "rawType": "object", "type": "string" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Cl]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+OAc]- ", "rawType": "float64", "type": "float" }, { "name": "CHEBI", "rawType": "object", "type": "unknown" }, { "name": "LIPID MAPS", "rawType": "object", "type": "unknown" }, { "name": "HMDB", "rawType": "object", "type": "unknown" }, { "name": "MetaNetX", "rawType": "object", "type": "unknown" }, { "name": "PMID", "rawType": "object", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "cded4c77-4765-4118-9fa8-b171ca8871d8", "rows": [ [ "56", "SLM:000000262", "Class", "1,2-diacyl-sn-glycerol", "1,2-sn-DAG | DAG | DG", "Diacylglycerol", "SLM:000000423", null, null, "OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C5H6O5R2", "0.0", null, null, null, null, null, null, null, null, null, null, null, "17815", null, null, "MNXM59", "10336610 | 10685032 | 10888667 | 10931938 | 11022048 | 12181444 | 14685263 | 14976195 | 15140260 | 15509571 | 15702972 | 15790568 | 15817490 | 15899900 | 15939762 | 16000311 | 1644792 | 16467296 | 16689792 | 17158099 | 17449912 | 17971454 | 17982138 | 18037386 | 18184806 | 18361507 | 18434318 | 1847919 | 19454763 | 19506037 | 20736081 | 20798281 | 21187285 | 22322963 | 23000145 | 7531435 | 7890667 | 8395015 | 8407970 | 8454637 | 8550586 | 8567632 | 8663293 | 8757862 | 9099673 | 9132017 | 9188725 | 9368028 | 9603941 | 9915823" ], [ "114", "SLM:000000341", "Class", "1-acyl-sn-glycerol", "MAG | MG", "Monoacylglycerol", "SLM:000117130", null, null, "OC[C@H](O)COC([*])=O", "InChI=none", null, "C4H7O4R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "64683", null, null, "MNXM2963", "10685032 | 15939762 | 18037386 | 8663293 | 9603941" ], [ "122", "SLM:000000355", "Class", "2-acylglycerol", "MAG | MG", "Monoacylglycerol", "SLM:000000403", null, null, "OCC(CO)OC([*])=O", "InChI=none", null, "C4H7O4R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "17389", null, null, "MNXM335", null ], [ "146", "SLM:000000400", "Class", "Triacylglycerol", "TAG | TG", null, "SLM:000117141", null, null, "[*]C(=O)OCC(COC([*])=O)OC([*])=O", "InChI=none", null, "C6H5O6R3", "0.0", null, null, null, null, null, null, null, null, null, null, null, "17855", null, null, "MNXM248", "12682047 | 16135509 | 16150821 | 21704635 | 27247428 | 29491250" ], [ "147", "SLM:000000401", "Class", "Diacylglycerol", "DAG | DG", null, "SLM:000117140", null, null, "[*]OCC(CO[*])O[*]", "InChI=none", null, "C5H6O5R2", "0.0", null, null, null, null, null, null, null, null, null, null, null, "18035", null, null, "MNXM59", "12682047 | 16135509 | 16150821 | 27247428 | 29491250" ], [ "148", "SLM:000000403", "Class", "Monoacylglycerol", "MAG | MG", null, "SLM:000117139", null, null, "[*]OCC(CO[*])O[*]", "InChI=none", null, "C4H7O4R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "17408", null, null, "MNXM2963", null ], [ "188", "SLM:000000450", "Class", "1-O-alkyl-sn-glycerol", "MAG(O-) | MG(O-)", "Monoacylglycerol (O-)", "SLM:000117131", null, null, "OC[C@H](O)CO[*]", "InChI=none", null, "C3H7O3R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "15850", null, null, "MNXM1701", "15788404" ], [ "282", "SLM:000000573", "Class", "1-O-alkyl-2-acyl-sn-glycerol", "DAG(O-) | DG(O-)", "Diacylglycerol (O-)", "SLM:000117133", null, null, "OC[C@@H](CO[*])OC([*])=O", "InChI=none", null, "C4H6O4R2", "0.0", null, null, null, null, null, null, null, null, null, null, null, "52595", null, null, "MNXM90768", null ], [ "304", "SLM:000000601", "Isomeric subspecies", "N-(2-hydroxytetracosanoyl)-sphinganine", "Cer(d18:0/24:0(2OH)) | Cer(d18:0/24:0-2OH)", "Ceramide (d18:0/24:0(2OH)) | N-(2-hydroxytetracosanoyl)-sphinganine | N-2-hydroxytetracosanoyl-sphinganine", "SLM:000000285", null, "SLM:000000830 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)CCCCCCCCCCCCCCC", "InChI=1S/C42H85NO4/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-25-27-29-31-33-35-37-41(46)42(47)43-39(38-44)40(45)36-34-32-30-28-26-24-16-14-12-10-8-6-4-2/h39-41,44-46H,3-38H2,1-2H3,(H,43,47)/t39-,40+,41?/m0/s1", "InChIKey=DGORBCXEWSENPF-MOKHYRRWSA-N", "C42H85NO4", "0.0", "668.145", "667.64786", "667.647312", "668.655137", "706.611019", "690.637081", "674.663316", "685.681686", "666.640584", "702.617262", "726.661713", "52371", "LMSP02020033", null, null, "18541923" ], [ "306", "SLM:000000603", "Isomeric subspecies", "N-(2-hydroxydocosanoyl)-sphinganine", "Cer(d18:0/22:0(2OH)) | Cer(d18:0/22:0-2OH)", "Ceramide (d18:0/22:0(2OH)) | N-(2-hydroxydocosanoyl)-sphinganine | N-2-hydroxydocosanoyl-sphinganine", "SLM:000000285", null, "SLM:000000828 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)CCCCCCCCCCCCCCC", "InChI=1S/C40H81NO4/c1-3-5-7-9-11-13-15-17-18-19-20-21-23-25-27-29-31-33-35-39(44)40(45)41-37(36-42)38(43)34-32-30-28-26-24-22-16-14-12-10-8-6-4-2/h37-39,42-44H,3-36H2,1-2H3,(H,41,45)/t37-,38+,39?/m0/s1", "InChIKey=NNLQQNODNROHPW-BFNXHEPRSA-N", "C40H81NO4", "0.0", "640.091", "639.61656", "639.616012", "640.623837", "678.579718", "662.605781", "646.632016", "657.650386", "638.609284", "674.585961", "698.630413", "67023", "LMSP02020032", null, "MNXM106875", "18541923" ], [ "308", "SLM:000000605", "Isomeric subspecies", "N-(2-hydroxyoctadecanoyl)-sphinganine", "Cer(d18:0/18:0(2OH)) | Cer(d18:0/18:0-2OH)", "Ceramide (d18:0/18:0(2OH)) | N-(2-hydroxyoctadecanoyl)-sphinganine | N-2-hydroxyoctadecanoyl-sphinganine", "SLM:000000285", null, "SLM:000000831 (n-acyl)", "CCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)CCCCCCCCCCCCCCC", "InChI=1S/C36H73NO4/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-35(40)36(41)37-33(32-38)34(39)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h33-35,38-40H,3-32H2,1-2H3,(H,37,41)/t33-,34+,35?/m0/s1", "InChIKey=TWVUZTCVZAHCIE-GWDKEWMYSA-N", "C36H73NO4", "0.0", "583.983", "583.55396", "583.553411", "584.561236", "622.517118", "606.543181", "590.569415", "601.587785", "582.546683", "618.523361", "642.567813", "67034", "LMSP02020030", null, null, "18541923" ], [ "310", "SLM:000000607", "Isomeric subspecies", "N-(2-hydroxyhexadecanoyl)-sphinganine", "Cer(d18:0/16:0(2OH)) | Cer(d18:0/16:0-2OH)", "Ceramide (d18:0/16:0(2OH)) | N-(2-hydroxyhexadecanoyl)-sphinganine | N-2-hydroxyhexadecanoyl-sphinganine", "SLM:000000285", null, "SLM:000000389 (n-acyl)", "CCCCCCCCCCCCCCC[C@@H](O)[C@H](CO)NC(=O)C(O)CCCCCCCCCCCCCC", "InChI=1S/C34H69NO4/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-32(37)31(30-36)35-34(39)33(38)29-27-25-23-21-18-16-14-12-10-8-6-4-2/h31-33,36-38H,3-30H2,1-2H3,(H,35,39)/t31-,32+,33?/m0/s1", "InChIKey=NQXMVCBJWMTLGK-XIWRNSNHSA-N", "C34H69NO4", "0.0", "555.929", "555.52266", "555.522111", "556.529936", "594.485818", "578.511881", "562.538115", "573.556485", "554.515383", "590.492061", "614.536513", "67043", "LMSP02020029", null, null, "18541923" ], [ "524", "SLM:000000849", "Isomeric subspecies", "20-hydroxy-(5Z,8Z,11Z,14Z)-eicosatetraenoate", "20H-(5Z,8Z,11Z,14Z)-ETE | 20-HETE", null, "SLM:000501319", null, null, "OCCCCC\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O3/c21-19-17-15-13-11-9-7-5-3-1-2-4-6-8-10-12-14-16-18-20(22)23/h1,3-4,6-7,9-10,12,21H,2,5,8,11,13-19H2,(H,22,23)/p-1/b3-1-,6-4-,9-7-,12-10-", "InChIKey=NNDIXBJHNLFJJP-DTLRTWKJSA-M", "C20H31O3", "-1.0", "319.4583", "320.235145", "320.234596", "321.242421", "359.198303", "343.224366", "327.2506", "338.26897", "319.227868", "355.204546", "379.248998", "76624", "LMFA03060009", "HMDB05998", "MNXM6760", "10620324 | 10660572 | 14634044 | 14660610 | 15364545 | 16081420 | 16820285 | 17112342 | 17341693 | 18577768 | 24563460" ], [ "534", "SLM:000000863", "Isomeric subspecies", "20-hydroxy-(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate", "20-H-(5Z,8Z,11Z,14Z,17Z)-EPE | 20-HEPE", "omega-hydroxy-(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate", "SLM:000501323", null, null, "OCCC=C/CC=C/CC=C/CC=C/CC=C/CCCC([O-])=O", "InChI=1S/C20H30O3/c21-19-17-15-13-11-9-7-5-3-1-2-4-6-8-10-12-14-16-18-20(22)23/h1,3-4,6-7,9-10,12-13,15,21H,2,5,8,11,14,16-19H2,(H,22,23)/p-1/b3-1-,6-4-,9-7-,12-10-,15-13-", "PPMOWWAALQWWLJ-NUKMUHRASA-M", "C20H29O3", "-1.0", "317.4425", null, null, null, null, null, null, null, null, null, null, "76639", null, null, null, "16820285 | 17112342 | 18577768 | 22772592" ], [ "573", "SLM:000000934", "Isomeric subspecies", "(9S)-hydroperoxy-(10E,12Z)-octadecadienoate", "(9S)-Hp-(10E,12Z)-ODE | (9S)-HpODE", null, "SLM:000501330", null, null, "CCCCC\\C=C/C=C/[C@H](CCCCCCCC([O-])=O)OO", "InChI=1S/C18H32O4/c1-2-3-4-5-6-8-11-14-17(22-21)15-12-9-7-10-13-16-18(19)20/h6,8,11,14,17,21H,2-5,7,9-10,12-13,15-16H2,1H3,(H,19,20)/p-1/b8-6-,14-11+/t17-/m1/s1", "InChIKey=JGUNZIWGNMQSBM-UINYOVNOSA-M", "C18H31O4", "-1.0", "311.4363", "312.23006", "312.229511", "313.237336", "351.193218", "335.219281", "319.245515", "330.263885", "311.222783", "347.199461", "371.243912", "60955", "LMFA02000012", "HMDB06940", "MNXM1867", "18949503 | 23233731 | 26264916 | 9305900" ], [ "574", "SLM:000000935", "Isomeric subspecies", "(15S)-hydroperoxy-(5Z,8Z,11Z,13E)-eicosatetraenoate", "(15S)-Hp-(5Z,8Z,11Z,13E)-ETE | (15S)-HpETE", null, "SLM:000501320", null, null, "CCCCC[C@H](OO)\\C=C\\C=C/C\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-13-16-19(24-23)17-14-11-9-7-5-4-6-8-10-12-15-18-20(21)22/h4-5,8-11,14,17,19,23H,2-3,6-7,12-13,15-16,18H2,1H3,(H,21,22)/p-1/b5-4-,10-8-,11-9-,17-14+/t19-/m0/s1", "InChIKey=BFWYTORDSFIVKP-VAEKSGALSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "57446", "LMFA03060014", "HMDB04244", "MNXM2314", "11278893 | 12704195 | 12881489 | 16112079 | 17459323 | 17493578 | 1944593 | 19737933 | 21068195 | 23242647 | 24282679 | 8188678 | 8334154 | 9177185 | 9261177" ], [ "575", "SLM:000000936", "Isomeric subspecies", "(13S)-hydroperoxy-(9Z,11E)-octadecadienoate", "(13S)-Hp-(9Z,11E)-ODE | (13S)-HpODE", null, "SLM:000501330", null, null, "CCCCC[C@H](OO)\\C=C\\C=C/CCCCCCCC([O-])=O", "InChI=1S/C18H32O4/c1-2-3-11-14-17(22-21)15-12-9-7-5-4-6-8-10-13-16-18(19)20/h7,9,12,15,17,21H,2-6,8,10-11,13-14,16H2,1H3,(H,19,20)/p-1/b9-7-,15-12+/t17-/m0/s1", "InChIKey=JDSRHVWSAMTSSN-IRQZEAMPSA-M", "C18H31O4", "-1.0", "311.4363", "312.23006", "312.229511", "313.237336", "351.193218", "335.219281", "319.245515", "330.263885", "311.222783", "347.199461", "371.243912", "57466", "LMFA02000034", "HMDB03871", "MNXM2313", "11256953 | 16624487 | 20923767 | 21068195 | 8188678 | 8334154 | 8617728" ], [ "580", "SLM:000000958", "Isomeric subspecies", "(9R)-hydroxy-(10E,12Z)-octadecadienoate", "(9R)-H-(10E,12Z)-ODE | (9R)-HODE", null, "SLM:000501329", null, null, "CCCCC\\C=C/C=C/[C@H](O)CCCCCCCC([O-])=O", "InChI=1S/C18H32O3/c1-2-3-4-5-6-8-11-14-17(19)15-12-9-7-10-13-16-18(20)21/h6,8,11,14,17,19H,2-5,7,9-10,12-13,15-16H2,1H3,(H,20,21)/p-1/b8-6-,14-11+/t17-/m0/s1", "InChIKey=NPDSHTNEKLQQIJ-WXUVIADPSA-M", "C18H31O3", "-1.0", "295.4375", "296.235145", "296.234596", "297.242421", "335.198303", "319.224366", "303.2506", "314.26897", "295.227868", "331.204546", "355.248998", "77895", "LMFA02000036", "HMDB04670", "MNXM39481", "21558561 | 9866708" ], [ "581", "SLM:000000959", "Isomeric subspecies", "(12R)-hydroperoxy-(5Z,8Z,10E,14Z)-eicosatetraenoate", "(12R)-Hp-(5Z,8Z,10E,14Z)-ETE | (12R)-HpETE", null, "SLM:000501320", null, null, "CCCCC\\C=C/C[C@@H](OO)\\C=C\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-4-5-10-13-16-19(24-23)17-14-11-8-6-7-9-12-15-18-20(21)22/h7-11,13-14,17,19,23H,2-6,12,15-16,18H2,1H3,(H,21,22)/p-1/b9-7-,11-8-,13-10-,17-14+/t19-/m1/s1", "InChIKey=ZIOZYRSDNLNNNJ-ZYBDYUKJSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "75230", "LMFA03060070", "HMDB04692", "MNXM9678", "12881489 | 9618483 | 9837935" ], [ "582", "SLM:000000960", "Isomeric subspecies", "(11R,12R)-hepoxilin A3 (8R)", "(8R)-H-(11R,12R)-Ep-(5Z,9E,14Z)-ETrE | (8R)-H-(11R,12R)-EpETrE | (8R)-HEpETrE", "(8R)-hydroxy-(11R,12R)-epoxy-(5Z,9E,14Z)-eicosatrienoate", "SLM:000508840", null, null, "CCCCC\\C=C/C[C@H]1O[C@@H]1\\C=C\\[C@H](O)C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-4-5-6-10-13-18-19(24-18)16-15-17(21)12-9-7-8-11-14-20(22)23/h6-7,9-10,15-19,21H,2-5,8,11-14H2,1H3,(H,22,23)/p-1/b9-7-,10-6-,16-15+/t17-,18-,19-/m1/s1", "InChIKey=SGTUOBURCVMACZ-WHKAPZRYSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "75232", null, null, "MNXM146463", "12881489" ], [ "583", "SLM:000000961", "Isomeric subspecies", "(12S)-hydroperoxy-(5Z,8Z,10E,14Z)-eicosatetraenoate", "(12S)-Hp-(5Z,8Z,10E,14Z)-ETE | (12S)-HpETE", null, "SLM:000501320", null, null, "CCCCC\\C=C/C[C@H](OO)\\C=C\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-4-5-10-13-16-19(24-23)17-14-11-8-6-7-9-12-15-18-20(21)22/h7-11,13-14,17,19,23H,2-6,12,15-16,18H2,1H3,(H,21,22)/p-1/b9-7-,11-8-,13-10-,17-14+/t19-/m0/s1", "InChIKey=ZIOZYRSDNLNNNJ-LQWMCKPYSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "57444", "LMFA03060013", "HMDB04243", "MNXM2765", "11115402 | 11256953 | 11278893 | 12881489 | 15123652 | 17493578 | 1944593 | 21068195 | 22984144 | 24282679 | 8188678 | 9195979" ], [ "584", "SLM:000000962", "Isomeric subspecies", "(11R,12S)-hepoxilin A3 (8R)", "(8R)-H-(11R,12S)-Ep-(5Z,9E,14Z)-ETrE | (8R)-H-(11R,12S)-EpETrE | (8R)-HEpETrE", "(8R)-hydroxy-(11S,12S)-epoxy-(5Z,9E,14Z)-eicosatrienoate", "SLM:000508840", null, null, "CCCCC\\C=C/C[C@@H]1O[C@H]1\\C=C\\[C@H](O)C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-4-5-6-10-13-18-19(24-18)16-15-17(21)12-9-7-8-11-14-20(22)23/h6-7,9-10,15-19,21H,2-5,8,11-14H2,1H3,(H,22,23)/p-1/b9-7-,10-6-,16-15+/t17-,18+,19+/m1/s1", "InChIKey=SGTUOBURCVMACZ-MEVKQHDMSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "75233", null, null, "MNXM146464", "12881489" ], [ "585", "SLM:000000963", "Isomeric subspecies", "(14S,15S)-hepoxilin B3 (13R)", "(13R)-H-(14S,15S)-Ep-(5Z,8Z,11Z)-ETrE | (13R)-H-(14S,15S)-EpETrE | (13R)-HEpETrE", "(13R)-hydroxy-(14S,15S)-epoxy-(5Z,8Z,11Z)-eicosatrienoate", "SLM:000508840", null, null, "CCCCC[C@@H]1O[C@H]1[C@H](O)\\C=C/C\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-11-15-18-20(24-18)17(21)14-12-9-7-5-4-6-8-10-13-16-19(22)23/h5-8,12,14,17-18,20-21H,2-4,9-11,13,15-16H2,1H3,(H,22,23)/p-1/b7-5-,8-6-,14-12-/t17-,18+,20+/m1/s1", "InChIKey=FMRVHRPEVIVXKX-ZJIVTKJASA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "75235", "LMFA03090006", null, "MNXM33366", "12881489 | 19737933" ], [ "586", "SLM:000000964", "Isomeric subspecies", "(11S,12S)-hepoxilin B3 (10R)", "(10R)-H-(11S,12S)-Ep-(5Z,8Z,14Z)-ETrE | (10R)-H-(11S,12S)-EpETrE | (10R)-HEpETrE", "(10R)-hydroxy-(11S,12S)-epoxy-(5Z,8Z,14Z)-eicosatrienoate", "SLM:000508840", null, null, "CCCCC\\C=C/C[C@@H]1O[C@H]1[C@H](O)\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-4-5-9-12-15-18-20(24-18)17(21)14-11-8-6-7-10-13-16-19(22)23/h6-7,9,11-12,14,17-18,20-21H,2-5,8,10,13,15-16H2,1H3,(H,22,23)/p-1/b7-6-,12-9-,14-11-/t17-,18+,20+/m1/s1", "InChIKey=DWNBPRRXEVJMPO-OANGEUSWSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "75234", null, null, "MNXM162877", "12881489" ], [ "587", "SLM:000000965", "Isomeric subspecies", "(8S)-hydroperoxy-(5Z,9E,11Z,14Z)-eicosatetraenoate", "(8S)-Hp-(5Z,9E,11Z,14Z)-ETE | (8S)-Hp-(5Z,9E,11Z,14Z)-ETE | (8S)-HpETE", null, "SLM:000501320", null, null, "CCCCC\\C=C/C\\C=C/C=C/[C@H](C\\C=C/CCCC([O-])=O)OO", "InChI=1S/C20H32O4/c1-2-3-4-5-6-7-8-9-10-13-16-19(24-23)17-14-11-12-15-18-20(21)22/h6-7,9-11,13-14,16,19,23H,2-5,8,12,15,17-18H2,1H3,(H,21,22)/p-1/b7-6-,10-9-,14-11-,16-13+/t19-/m1/s1", "InChIKey=QQUFCXFFOZDXLA-VYOQERLCSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "75322", "LMFA03060073", "HMDB04699", "MNXM91461", "10965849 | 15558016 | 16112079 | 16143298 | 17045234 | 9305900" ], [ "588", "SLM:000000966", "Isomeric subspecies", "(8S,9S)-hepoxilin A3 (10R)", "(10R)-H-(8S,9S)-Ep-(5Z,11Z,14Z)-ETrE | (10R)-H-(8S,9S)-EpETrE | (10R)-HEpETrE", "(10R)-hydroxy-(8S,9S)-epoxy-(5Z,11Z,14Z)-eicosatrienoate", "SLM:000508840", null, null, "CCCCC\\C=C/C\\C=C/[C@H](O)[C@H]1O[C@H]1C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-4-5-6-7-8-11-14-17(21)20-18(24-20)15-12-9-10-13-16-19(22)23/h6-7,9,11-12,14,17-18,20-21H,2-5,8,10,13,15-16H2,1H3,(H,22,23)/p-1/b7-6-,12-9-,14-11-/t17-,18-,20+/m0/s1", "InChIKey=WWOUHSVXNYZFBQ-MCRRFWBCSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "75327", null, null, "MNXM146486", "17045234" ], [ "589", "SLM:000000967", "Isomeric subspecies", "(8R)-hydroperoxy-(5Z,9E,11Z,14Z)-eicosatetraenoate", "(8R)-Hp-(5Z,9E,11Z,14Z)-ETE | (8R)-HpETE", null, "SLM:000501320", null, null, "CCCCC\\C=C/C\\C=C/C=C/[C@@H](C\\C=C/CCCC([O-])=O)OO", "InChI=1S/C20H32O4/c1-2-3-4-5-6-7-8-9-10-13-16-19(24-23)17-14-11-12-15-18-20(21)22/h6-7,9-11,13-14,16,19,23H,2-5,8,12,15,17-18H2,1H3,(H,21,22)/p-1/b7-6-,10-9-,14-11-,16-13+/t19-/m0/s1", "InChIKey=QQUFCXFFOZDXLA-GTYUHVKWSA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "57447", "LMFA03060037", "HMDB04699", "MNXM3200", "10559269 | 17045234 | 9302294" ], [ "590", "SLM:000000968", "Isomeric subspecies", "8-oxo-(5Z,9E,11Z,14Z)-eicosatetraenoate", "8-oxo-(5Z,9E,11Z,14Z)-ETE | 8-keto-(5Z,9E,11Z,14Z)-ETE | 8-oxo-(5Z,9E,11Z,14Z)-ETE | 8-oxo-ETE | 8-keto-(5Z,9E,11Z,14Z)-ETE | 8-keto-ETE | 8-KETE ", "8-keto-(5Z,9E,11Z,14Z)-eicosatetraenoate", "SLM:000501313", null, null, "CCCCC\\C=C/C\\C=C/C=C/C(=O)C\\C=C/CCCC([O-])=O", "InChI=1S/C20H30O3/c1-2-3-4-5-6-7-8-9-10-13-16-19(21)17-14-11-12-15-18-20(22)23/h6-7,9-11,13-14,16H,2-5,8,12,15,17-18H2,1H3,(H,22,23)/p-1/b7-6-,10-9-,14-11-,16-13+", "InChIKey=ULAXHDZCBOQYGV-HEJOTXCHSA-M", "C20H29O3", "-1.0", "317.4425", "318.219495", "318.218946", "319.226771", "357.182653", "341.208716", "325.23495", "336.25332", "317.212218", "353.188896", "377.233348", "75326", "LMFA03060057", null, "MNXM26601", "17045234 | 18977231" ], [ "591", "SLM:000000969", "Isomeric subspecies", "(5S)-hydroperoxy-(6E,8Z,11Z,14Z)-eicosatetraenoate", "(5S)-Hp-(6E,8Z,11Z,14Z)-ETE | (5S)-HpETE", null, "SLM:000501320", null, null, "CCCCC\\C=C/C\\C=C/C\\C=C/C=C/[C@H](CCCC([O-])=O)OO", "InChI=1S/C20H32O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-16-19(24-23)17-15-18-20(21)22/h6-7,9-10,12-14,16,19,23H,2-5,8,11,15,17-18H2,1H3,(H,21,22)/p-1/b7-6-,10-9-,13-12-,16-14+/t19-/m1/s1", "InChIKey=JNUUNUQHXIOFDA-JGKLHWIESA-M", "C20H31O4", "-1.0", "335.4577", "336.23006", "336.229511", "337.237336", "375.193218", "359.219281", "343.245515", "354.263885", "335.222783", "371.199461", "395.243912", "57450", "LMFA03060012", "HMDB01193", "MNXM808", "17045234 | 21068195 | 24282679 | 24893149 | 27145229 | 31664810 | 8615788 | 8631361 | 9278457" ], [ "598", "SLM:000000981", "Class", "Monoalkyldiacylglycerol", "TAG(O-) | TG(O-)", "Triacylglycerol (O-)", "SLM:000117141", null, null, "[*]OCC(CO[*])O[*]", "InChI=none", null, "C5H5O5R3", "0.0", null, null, null, null, null, null, null, null, null, null, null, "76584", null, null, "MNXM158094", null ], [ "602", "SLM:000000987", "Isomeric subspecies", "Trioxilin A3", "(8,11R,12S)-TriH-(5Z,9E,14Z)-ETrE | (8,11R,12S)-TriHETrE", "(8,11R,12S)-trihydroxy-(5Z,9E,14Z)-eicosatrienoate", "SLM:000501319", null, null, "CCCCC\\C=C/C[C@H](O)[C@H](O)\\C=C\\C(O)C\\C=C/CCCC([O-])=O", "InChI=1S/C20H34O5/c1-2-3-4-5-6-10-13-18(22)19(23)16-15-17(21)12-9-7-8-11-14-20(24)25/h6-7,9-10,15-19,21-23H,2-5,8,11-14H2,1H3,(H,24,25)/p-1/b9-7-,10-6-,16-15+/t17?,18-,19+/m0/s1", "InChIKey=WPLPEZUSILBTGP-CIQDQOFUSA-M", "C20H33O5", "-1.0", "353.4736", null, null, null, null, null, null, null, null, null, null, "78100", null, "HMDB01977", null, "21217101" ], [ "603", "SLM:000000988", "Isomeric subspecies", "(11S,12S)-hepoxilin B3 (8S)", "(8S)-H-(11S,12S)-Ep-(5Z,8Z,14Z)-ETrE | (8S)-H-(11S,12S)-EpETrE | (8S)-HEpETrE", "10-hydroxy-(11S,12S)-epoxy-(5Z,8Z,14Z)-eicosatrienoate", "SLM:000508840", null, null, "CCCCC\\C=C/C[C@@H]1O[C@@H]1C(O)\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O4/c1-2-3-4-5-9-12-15-18-20(24-18)17(21)14-11-8-6-7-10-13-16-19(22)23/h6-7,9,11-12,14,17-18,20-21H,2-5,8,10,13,15-16H2,1H3,(H,22,23)/p-1/b7-6-,12-9-,14-11-/t17?,18-,20+/m0/s1", "InChIKey=DWNBPRRXEVJMPO-YZTVQBIISA-M", "C20H31O4", "-1.0", "335.4583", null, null, null, null, null, null, null, null, null, null, "78084", null, "HMDB04690", null, "21217101" ], [ "604", "SLM:000000989", "Isomeric subspecies", "Trioxilin B3", "(10,11S,12R)-TriH-(5Z,8Z,14Z)-ETrE | (10,11S,12R)-TriHETrE", "(10,11S,12R)-trihydroxy-(5Z,8Z,14Z)-eicosatrienoate", "SLM:000501319", null, null, "CCCCC\\C=C/C[C@@H](O)[C@H](O)C(O)\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H34O5/c1-2-3-4-5-8-11-14-17(21)20(25)18(22)15-12-9-6-7-10-13-16-19(23)24/h6-8,11-12,15,17-18,20-22,25H,2-5,9-10,13-14,16H2,1H3,(H,23,24)/p-1/b7-6-,11-8-,15-12-/t17-,18?,20+/m1/s1", "InChIKey=GOHNIXDAQODZKP-OZPSOFALSA-M", "C20H33O5", "-1.0", "353.4736", null, null, null, null, null, null, null, null, null, null, "78099", null, "HMDB01965", null, "21217101" ], [ "605", "SLM:000000990", "Isomeric subspecies", "(8S)-hydroxy-(5Z,9E,11Z,14Z)-eicosatetraenoate", "(8S)-H-(5Z,9E,11Z,14Z)-ETE | (8S)-HETE", null, "SLM:000501319", null, null, "CCCCC\\C=C/C\\C=C/C=C/[C@@H](O)C\\C=C/CCCC([O-])=O", 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Lipid IDLevelNameAbbreviation*Synonyms*Lipid class*ParentComponents*SMILES (pH7.3)InChI (pH7.3)...Exact m/z of [M+Li]+Exact m/z of [M+NH4]+Exact m/z of [M-H]-Exact m/z of [M+Cl]-Exact m/z of [M+OAc]-CHEBILIPID MAPSHMDBMetaNetXPMID
56SLM:000000262Class1,2-diacyl-sn-glycerol1,2-sn-DAG | DAG | DGDiacylglycerolSLM:000000423NaNNaNOC[C@@H](COC([*])=O)OC([*])=OInChI=none...NaNNaNNaNNaNNaN17815NaNNaNMNXM5910336610 | 10685032 | 10888667 | 10931938 | 11...
114SLM:000000341Class1-acyl-sn-glycerolMAG | MGMonoacylglycerolSLM:000117130NaNNaNOC[C@H](O)COC([*])=OInChI=none...NaNNaNNaNNaNNaN64683NaNNaNMNXM296310685032 | 15939762 | 18037386 | 8663293 | 960...
122SLM:000000355Class2-acylglycerolMAG | MGMonoacylglycerolSLM:000000403NaNNaNOCC(CO)OC([*])=OInChI=none...NaNNaNNaNNaNNaN17389NaNNaNMNXM335NaN
146SLM:000000400ClassTriacylglycerolTAG | TGNaNSLM:000117141NaNNaN[*]C(=O)OCC(COC([*])=O)OC([*])=OInChI=none...NaNNaNNaNNaNNaN17855NaNNaNMNXM24812682047 | 16135509 | 16150821 | 21704635 | 27...
147SLM:000000401ClassDiacylglycerolDAG | DGNaNSLM:000117140NaNNaN[*]OCC(CO[*])O[*]InChI=none...NaNNaNNaNNaNNaN18035NaNNaNMNXM5912682047 | 16135509 | 16150821 | 27247428 | 29...
..................................................................
505694SLM:000508489Molecular subspeciesPhosphatidylglycerol (O-17:1_0:0)LPG(O-17:1_0:0) | PG(O-17:1_0:0)Lysophosphatidylglycerol (O-17:1_0:0)SLM:000508807SLM:000508779SLM:000001333 (sn1 or sn2 or sn3)OCC(O)COP([O-])(=O)OCC(CO[*])O[*]InChI=none...489.316311500.334681481.293579517.270257541.314708NaNNaNNaNMNXM629334NaN
505695SLM:000508490Molecular subspeciesPhosphatidylglycerol (O-15:1_0:0)LPG(O-15:1_0:0) | PG(O-15:1_0:0)Lysophosphatidylglycerol (O-15:1_0:0)SLM:000508807SLM:000508775SLM:000001331 (sn1 or sn2 or sn3)OCC(O)COP([O-])(=O)OCC(CO[*])O[*]InChI=none...461.285011472.303381453.262279489.238957513.283408NaNNaNNaNMNXM628940NaN
505696SLM:000508491Molecular subspeciesPhosphatidylglycerol (O-13:1_0:0)LPG(O-13:1_0:0) | PG(O-13:1_0:0)Lysophosphatidylglycerol (O-13:1_0:0)SLM:000508807SLM:000508771SLM:000001329 (sn1 or sn2 or sn3)OCC(O)COP([O-])(=O)OCC(CO[*])O[*]InChI=none...433.253711444.272081425.230979461.207657485.252108NaNNaNNaNMNXM628548NaN
595061SLM:000597889Isomeric subspecies7-oxoresolvin D27-oxo-RvD2| 7-keto-RvD2(16R,17S)-dihydroxy-7-oxo-(4Z,8E,10Z,12E,14E,1...SLM:000508853 | SLM:000782222NaNNaNC(C/C=C\\CC(/C=C/C=C\\C=C\\C=C\\[C@H]([C@H](C/C=C\\...InChI=1S/C22H30O5/c1-2-3-9-16-20(24)21(25)17-1......381.224780392.243150373.202048409.178725433.223177137497NaNNaNNaN22844113
595062SLM:000597890Isomeric subspecies16-oxoresolvin D216-oxo-RvD2| 16-keto-RvD2(7S,17S)-dihydroxy-16-oxo-(4Z,8E,10Z,12E,14E,1...SLM:000508853 | SLM:000782222NaNNaNC(C/C=C\\C[C@@H](\\C=C\\C=C/C=C/C=C/C([C@H](C/C=C...InChI=1S/C22H30O5/c1-2-3-9-16-20(24)21(25)17-1......381.224780392.243150373.202048409.178725433.223177137498NaNNaNNaN22844113
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9768 rows × 29 columns

\n", "
" ], "text/plain": [ " Lipid ID Level \\\n", "56 SLM:000000262 Class \n", "114 SLM:000000341 Class \n", "122 SLM:000000355 Class \n", "146 SLM:000000400 Class \n", "147 SLM:000000401 Class \n", "... ... ... \n", "505694 SLM:000508489 Molecular subspecies \n", "505695 SLM:000508490 Molecular subspecies \n", "505696 SLM:000508491 Molecular subspecies \n", "595061 SLM:000597889 Isomeric subspecies \n", "595062 SLM:000597890 Isomeric subspecies \n", "\n", " Name Abbreviation* \\\n", "56 1,2-diacyl-sn-glycerol 1,2-sn-DAG | DAG | DG \n", "114 1-acyl-sn-glycerol MAG | MG \n", "122 2-acylglycerol MAG | MG \n", "146 Triacylglycerol TAG | TG \n", "147 Diacylglycerol DAG | DG \n", "... ... ... \n", "505694 Phosphatidylglycerol (O-17:1_0:0) LPG(O-17:1_0:0) | PG(O-17:1_0:0) \n", "505695 Phosphatidylglycerol (O-15:1_0:0) LPG(O-15:1_0:0) | PG(O-15:1_0:0) \n", "505696 Phosphatidylglycerol (O-13:1_0:0) LPG(O-13:1_0:0) | PG(O-13:1_0:0) \n", "595061 7-oxoresolvin D2 7-oxo-RvD2| 7-keto-RvD2 \n", "595062 16-oxoresolvin D2 16-oxo-RvD2| 16-keto-RvD2 \n", "\n", " Synonyms* \\\n", "56 Diacylglycerol \n", "114 Monoacylglycerol \n", "122 Monoacylglycerol \n", "146 NaN \n", "147 NaN \n", "... ... \n", "505694 Lysophosphatidylglycerol (O-17:1_0:0) \n", "505695 Lysophosphatidylglycerol (O-15:1_0:0) \n", "505696 Lysophosphatidylglycerol (O-13:1_0:0) \n", "595061 (16R,17S)-dihydroxy-7-oxo-(4Z,8E,10Z,12E,14E,1... \n", "595062 (7S,17S)-dihydroxy-16-oxo-(4Z,8E,10Z,12E,14E,1... \n", "\n", " Lipid class* Parent \\\n", "56 SLM:000000423 NaN \n", "114 SLM:000117130 NaN \n", "122 SLM:000000403 NaN \n", "146 SLM:000117141 NaN \n", "147 SLM:000117140 NaN \n", "... ... ... \n", "505694 SLM:000508807 SLM:000508779 \n", "505695 SLM:000508807 SLM:000508775 \n", "505696 SLM:000508807 SLM:000508771 \n", "595061 SLM:000508853 | SLM:000782222 NaN \n", "595062 SLM:000508853 | SLM:000782222 NaN \n", "\n", " Components* \\\n", "56 NaN \n", "114 NaN \n", "122 NaN \n", "146 NaN \n", "147 NaN \n", "... ... \n", "505694 SLM:000001333 (sn1 or sn2 or sn3) \n", "505695 SLM:000001331 (sn1 or sn2 or sn3) \n", "505696 SLM:000001329 (sn1 or sn2 or sn3) \n", "595061 NaN \n", "595062 NaN \n", "\n", " SMILES (pH7.3) \\\n", "56 OC[C@@H](COC([*])=O)OC([*])=O \n", "114 OC[C@H](O)COC([*])=O \n", "122 OCC(CO)OC([*])=O \n", "146 [*]C(=O)OCC(COC([*])=O)OC([*])=O \n", "147 [*]OCC(CO[*])O[*] \n", "... ... \n", "505694 OCC(O)COP([O-])(=O)OCC(CO[*])O[*] \n", "505695 OCC(O)COP([O-])(=O)OCC(CO[*])O[*] \n", "505696 OCC(O)COP([O-])(=O)OCC(CO[*])O[*] \n", "595061 C(C/C=C\\CC(/C=C/C=C\\C=C\\C=C\\[C@H]([C@H](C/C=C\\... \n", "595062 C(C/C=C\\C[C@@H](\\C=C\\C=C/C=C/C=C/C([C@H](C/C=C... \n", "\n", " InChI (pH7.3) ... \\\n", "56 InChI=none ... \n", "114 InChI=none ... \n", "122 InChI=none ... \n", "146 InChI=none ... \n", "147 InChI=none ... \n", "... ... ... \n", "505694 InChI=none ... \n", "505695 InChI=none ... \n", "505696 InChI=none ... \n", "595061 InChI=1S/C22H30O5/c1-2-3-9-16-20(24)21(25)17-1... ... \n", "595062 InChI=1S/C22H30O5/c1-2-3-9-16-20(24)21(25)17-1... ... \n", "\n", " Exact m/z of [M+Li]+ Exact m/z of [M+NH4]+ Exact m/z of [M-H]- \\\n", "56 NaN NaN NaN \n", "114 NaN NaN NaN \n", "122 NaN NaN NaN \n", "146 NaN NaN NaN \n", "147 NaN NaN NaN \n", "... ... ... ... \n", "505694 489.316311 500.334681 481.293579 \n", "505695 461.285011 472.303381 453.262279 \n", "505696 433.253711 444.272081 425.230979 \n", "595061 381.224780 392.243150 373.202048 \n", "595062 381.224780 392.243150 373.202048 \n", "\n", " Exact m/z of [M+Cl]- Exact m/z of [M+OAc]- CHEBI LIPID MAPS \\\n", "56 NaN NaN 17815 NaN \n", "114 NaN NaN 64683 NaN \n", "122 NaN NaN 17389 NaN \n", "146 NaN NaN 17855 NaN \n", "147 NaN NaN 18035 NaN \n", "... ... ... ... ... \n", "505694 517.270257 541.314708 NaN NaN \n", "505695 489.238957 513.283408 NaN NaN \n", "505696 461.207657 485.252108 NaN NaN \n", "595061 409.178725 433.223177 137497 NaN \n", "595062 409.178725 433.223177 137498 NaN \n", "\n", " HMDB MetaNetX PMID \n", "56 NaN MNXM59 10336610 | 10685032 | 10888667 | 10931938 | 11... \n", "114 NaN MNXM2963 10685032 | 15939762 | 18037386 | 8663293 | 960... \n", "122 NaN MNXM335 NaN \n", "146 NaN MNXM248 12682047 | 16135509 | 16150821 | 21704635 | 27... \n", "147 NaN MNXM59 12682047 | 16135509 | 16150821 | 27247428 | 29... \n", "... ... ... ... \n", "505694 NaN MNXM629334 NaN \n", "505695 NaN MNXM628940 NaN \n", "505696 NaN MNXM628548 NaN \n", "595061 NaN NaN 22844113 \n", "595062 NaN NaN 22844113 \n", "\n", "[9768 rows x 29 columns]" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "Checking split characters (|) in Synonyms*\n", "Found 19853 rows with split characters\n" ] }, { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "unknown" }, { "name": "Name", "rawType": "object", "type": "string" }, { "name": "Abbreviation*", "rawType": "object", "type": "unknown" }, { "name": "Synonyms*", "rawType": "object", "type": "string" }, { "name": "Lipid class*", "rawType": "object", "type": "string" }, { "name": "Parent", "rawType": "object", "type": "unknown" }, { "name": "Components*", "rawType": "object", "type": "unknown" }, { "name": "SMILES (pH7.3)", "rawType": "object", "type": "string" }, { "name": "InChI (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "string" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Cl]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+OAc]- ", "rawType": "float64", "type": "float" }, { "name": "CHEBI", "rawType": "object", "type": "unknown" }, { "name": "LIPID MAPS", "rawType": "object", "type": "unknown" }, { "name": "HMDB", "rawType": "object", "type": "unknown" }, { "name": "MetaNetX", "rawType": "object", "type": "unknown" }, { "name": "PMID", "rawType": "object", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "d7c62d28-0a61-40db-809a-3b8520c0c01d", "rows": [ [ "11", "SLM:000000101", "Class", "1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol-3'-phosphate)", "PA", "1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero-3'-phosphate) | Phosphatidylglycerophosphate", "SLM:000477285", null, null, "O[C@@H](COP([O-])([O-])=O)COP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C8H11O13P2R2", "-3.0", null, null, null, null, null, null, null, null, null, null, null, "60110", null, null, "MNXM871", "20485265 | 9880566" ], [ "17", "SLM:000000147", "Isomeric subspecies", "N-(9Z-octadecenoyl)-ethanolamine", "NAE (18:1(9Z))", "(9Z-octadecenoyl)-ethanolamide | N-(9Z-octadecenoyl) ethanolamine", "SLM:000000378", null, null, "CCCCCCCC\\C=C/CCCCCCCC(=O)NCCO", "InChI=1S/C20H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-20(23)21-18-19-22/h9-10,22H,2-8,11-19H2,1H3,(H,21,23)/b10-9-", "InChIKey=BOWVQLFMWHZBEF-KTKRTIGZSA-N", "C20H39NO2", "0.0", "325.5292", "325.29808", "325.297531", "326.305356", "364.261238", "348.287301", "332.313535", "343.331905", "324.290803", "360.267481", "384.311932", "71466", null, "HMDB02088", "MNXM107386", "14634025 | 16527816 | 17015445 | 17626977 | 17655883 | 18227059 | 21562563 | 25596343 | 27637550" ], [ "18", "SLM:000000149", "Isomeric subspecies", "N-hexadecanoyl-ethanolamine", "NAE (16:0)", "hexadecanoyl-ethanolamide | N-hexadecanoyl ethanolamine", "SLM:000000378", null, null, "CCCCCCCCCCCCCCCC(=O)NCCO", "InChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)19-16-17-20/h20H,2-17H2,1H3,(H,19,21)", "InChIKey=HXYVTAGFYLMHSO-UHFFFAOYSA-N", "C18H37NO2", "0.0", "299.4919", "299.282429", "299.281881", "300.289706", "338.245588", "322.271651", "306.297885", "317.316255", "298.275153", "334.251831", "358.296282", "71464", null, "HMDB02100", "MNXM107548", "12824167 | 14634025 | 15655246 | 15760304 | 16527816 | 17015445 | 17655883 | 18227059 | 21562563 | 21801852 | 22825852 | 25423491 | 25596343 | 27637550" ], [ "19", "SLM:000000178", "Isomeric subspecies", "N-(docosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/22:0)", "Ceramide (iso-d17:1(4E)/22:0) | N-docosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000392021", "SLM:000000827 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C39H77NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-22-25-28-31-34-39(43)40-37(35-41)38(42)33-30-27-24-21-19-20-23-26-29-32-36(2)3/h30,33,36-38,41-42H,4-29,31-32,34-35H2,1-3H3,(H,40,43)/b33-30+/t37-,38+/m0/s1", "InChIKey=XMCZTIGIXKXPGG-KNEGYRQWSA-N", "C39H77NO3", "0.0", "608.0336", "607.590345", "607.589797", "608.597622", "646.553504", "630.579566", "614.605801", "625.624171", "606.583069", "642.559747", "666.604198", "71377", null, null, "MNXM107026", "19372430" ], [ "20", "SLM:000000179", "Isomeric subspecies", "N-(heneicosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/21:0)", "Ceramide (iso-d17:1(4E)/21:0) | N-henicosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000392020", "SLM:000001207 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C38H75NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-21-24-27-30-33-38(42)39-36(34-40)37(41)32-29-26-23-20-18-19-22-25-28-31-35(2)3/h29,32,35-37,40-41H,4-28,30-31,33-34H2,1-3H3,(H,39,42)/b32-29+/t36-,37+/m0/s1", "InChIKey=XTOGDASSFFGCNZ-DXPOGGQJSA-N", "C38H75NO3", "0.0", "594.007", "593.574695", "593.574147", "594.581972", "632.537854", "616.563916", "600.590151", "611.608521", "592.567419", "628.544097", "652.588548", "71375", null, null, "MNXM107036", "19372430" ], [ "23", "SLM:000000182", "Isomeric subspecies", "N-(tetracosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/24:0)", "Ceramide (iso-d17:1(4E)/24:0) | N-tetracosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000392028", "SLM:000000414 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C41H81NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-24-27-30-33-36-41(45)42-39(37-43)40(44)35-32-29-26-23-21-22-25-28-31-34-38(2)3/h32,35,38-40,43-44H,4-31,33-34,36-37H2,1-3H3,(H,42,45)/b35-32+/t39-,40+/m0/s1", "InChIKey=TVDHQFWAJSGJQN-KBONVYKJSA-N", "C41H81NO3", "0.0", "636.0867", "635.621646", "635.621097", "636.628922", "674.584804", "658.610867", "642.637101", "653.655471", "634.614369", "670.591047", "694.635498", "71381", null, null, "MNXM107141", "19372430" ], [ "24", "SLM:000000183", "Isomeric subspecies", "N-(hexacosanoyl)-15-methylhexadecasphing-4-enine", "Cer(iso-d17:1(4E)/26:0)", "Ceramide (iso-d17:1(4E)/26:0) | N-hexacosanoyl-15-methylhexadecasphing-4-enine", "SLM:000000002", "SLM:000392033", "SLM:000000539 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C43H85NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-26-29-32-35-38-43(47)44-41(39-45)42(46)37-34-31-28-25-23-24-27-30-33-36-40(2)3/h34,37,40-42,45-46H,4-33,35-36,38-39H2,1-3H3,(H,44,47)/b37-34+/t41-,42+/m0/s1", "InChIKey=NPJDYKPLWLEWOS-KTSAFCHVSA-N", "C43H85NO3", "0.0", "664.1399", "663.652946", "663.652397", "664.660222", "702.616104", "686.642167", "670.668401", "681.686771", "662.645669", "698.622347", "722.666799", "71385", null, null, "MNXM107064", "19372430" ], [ "26", "SLM:000000185", "Isomeric subspecies", "N-(hexacosanoyl)-15-methylhexadecasphing-4-enine-1-phosphocholine", "SM(iso-d17:1(4E)/26:0)", "N-hexacosanoyl-15-methylhexadecasphing-4-enine-1-phosphocholine | Sphingomyelin (iso-d17:1(4E)/26:0)", "SLM:000000007", "SLM:000394465", "SLM:000000539 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C48H97N2O6P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-29-32-35-38-41-48(52)49-46(44-56-57(53,54)55-43-42-50(4,5)6)47(51)40-37-34-31-28-26-27-30-33-36-39-45(2)3/h37,40,45-47,51H,7-36,38-39,41-44H2,1-6H3,(H-,49,52,53,54)/b40-37+/t46-,47+/m0/s1", "InChIKey=JWWVBMRNPGAKSM-LWQSKWNHSA-N", "C48H97N2O6P", "0.0", "829.2673", "828.708425", "828.707877", "829.715702", "867.671584", "851.697646", "835.723881", "846.742251", null, "863.677827", "887.722278", "70938", null, null, "MNXM107065", "19372430" ], [ "36", "SLM:000000196", "Isomeric subspecies", "N-(heneicosanoyl)-15-methylhexadecasphing-4-enine-1-phosphocholine", "SM(iso-d17:1(4E)/21:0)", "N-henicosanoyl-15-methylhexadecasphing-4-enine-1-phosphocholine | Sphingomyelin (iso-d17:1(4E)/21:0)", "SLM:000000007", "SLM:000394452", "SLM:000001207 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C43H87N2O6P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-24-27-30-33-36-43(47)44-41(39-51-52(48,49)50-38-37-45(4,5)6)42(46)35-32-29-26-23-21-22-25-28-31-34-40(2)3/h32,35,40-42,46H,7-31,33-34,36-39H2,1-6H3,(H-,44,47,48,49)/b35-32+/t41-,42+/m0/s1", "InChIKey=HMQRZNBWVNRNRL-UXROQNIDSA-N", "C43H87N2O6P", "0.0", "759.1344", "758.630175", "758.629626", "759.637451", "797.593333", "781.619396", "765.645631", "776.664001", null, "793.599576", "817.644028", "70903", null, null, "MNXM107041", "19372430" ], [ "37", "SLM:000000197", "Isomeric subspecies", "N-(docosanoyl)-15-methylhexadecasphing-4-enine-1-phosphocholine", "SM(iso-d17:1(4E)/22:0)", "N-docosanoyl-15-methylhexadecasphing-4-enine-1-phosphocholine | Sphingomyelin (iso-d17:1(4E)/22:0)", "SLM:000000007", "SLM:000394453", "SLM:000000827 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](COP([O-])(=O)OCC[N+](C)(C)C)[C@H](O)\\C=C\\CCCCCCCCCC(C)C", "InChI=1S/C44H89N2O6P/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-25-28-31-34-37-44(48)45-42(40-52-53(49,50)51-39-38-46(4,5)6)43(47)36-33-30-27-24-22-23-26-29-32-35-41(2)3/h33,36,41-43,47H,7-32,34-35,37-40H2,1-6H3,(H-,45,48,49,50)/b36-33+/t42-,43+/m0/s1", "InChIKey=RPNHAFAVDGKYBE-IRZMMJPMSA-N", "C44H89N2O6P", "0.0", "773.161", "772.645825", "772.645277", "773.653102", "811.608983", "795.635046", "779.661281", "790.679651", null, "807.615226", "831.659678", "70910", null, null, "MNXM107027", "19372430" ], [ "57", "SLM:000000263", "Class", "Ceramide (iso-t17:0)", "Cer(iso-t17:0)", "N-acyl-15-methylhexadecaphytosphingosine | N-acyl-4-hydroxy-15-methylhexadecasphinganine", "SLM:000399814", null, null, "CC(C)CCCCCCCCCC[C@@H](O)[C@@H](O)[C@H](CO)NC([*])=O", "InChI=none", null, "C18H36NO4R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "71234", null, null, "MNXM97114", null ], [ "75", "SLM:000000294", "Isomeric subspecies", "N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine", "NAE (20:4(5Z,8Z,11Z,14Z))", "(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamide | anandamide", "SLM:000000378", null, null, "CCCCC\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCC(=O)NCCO", "InChI=1S/C22H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-22(25)23-20-21-24/h6-7,9-10,12-13,15-16,24H,2-5,8,11,14,17-21H2,1H3,(H,23,25)/b7-6-,10-9-,13-12-,16-15-", "InChIKey=LGEQQWMQCRIYKG-DOFZRALJSA-N", "C22H37NO2", "0.0", "347.5347", "347.282429", "347.281881", "348.289706", "386.245588", "370.271651", "354.297885", "365.316255", "346.275153", "382.251831", "406.296282", "2700", null, "HMDB04080", null, "14634025 | 16527816 | 16938887 | 17015445 | 17626977 | 17649977 | 17655883 | 18227059 | 18549450 | 18698000 | 20702771 | 21289075 | 21562563 | 25423491 | 25596343 | 27571266 | 27637550 | 32271712" ], [ "76", "SLM:000000296", "Isomeric subspecies", "(5Z,8Z,11Z,14Z)-eicosatetraenoate", null, "20:4(5Z,8Z,11Z,14Z) | Arachidonate", "SLM:000389801", null, null, "CCCCC\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h6-7,9-10,12-13,15-16H,2-5,8,11,14,17-19H2,1H3,(H,21,22)/p-1/b7-6-,10-9-,13-12-,16-15-", "InChIKey=YZXBAPSDXZZRGB-DOFZRALJSA-M", "C20H31O2", "-1.0", "303.4595", "304.24023", "304.239682", "305.247507", "343.203389", "327.229451", "311.255686", "322.274056", "303.232954", "339.209632", "363.254083", "32395", "LMFA01030001", "HMDB01043", "MNXM135", "10085124 | 10320809 | 10358058 | 10542053 | 10559269 | 10620324 | 10660572 | 10681567 | 10744668 | 10791960 | 10854433 | 10908295 | 10965849 | 11034610 | 11162607 | 11180564 | 11192938 | 11256953 | 11673457 | 11927584 | 12244105 | 12522102 | 12672805 | 12704195 | 14634044 | 14636062 | 14660610 | 14709560 | 15007068 | 15041462 | 15084647 | 15364545 | 15558016 | 15695510 | 15699031 | 15908428 | 16112079 | 16143298 | 16617059 | 16762313 | 16820285 | 16940157 | 17015445 | 17112342 | 17158102 | 17293613 | 17341693 | 17472963 | 17493578 | 17649977 | 18171998 | 18258213 | 18451993 | 18577768 | 18614531 | 19029917 | 19047760 | 19169353 | 1944593 | 19453107 | 19615464 | 19965576 | 20068046 | 20079333 | 20972997 | 21049984 | 21242590 | 21454566 | 21562563 | 21880860 | 22586271 | 22923616 | 22942274 | 22969151 | 22984144 | 23533611 | 23936004 | 24282679 | 24368842 | 24563460 | 24628888 | 24893149 | 24958911 | 25290914 | 25580854 | 26989199 | 27374330 | 28209804 | 30237167 | 31664810 | 32271712 | 7574697 | 7592599 | 7794891 | 7883976 | 7947975 | 8188678 | 8300559 | 8334154 | 8615788 | 8631361 | 8631948 | 9048568 | 9143331 | 9177185 | 9302294 | 9305900 | 9425121 | 9435160 | 9618483 | 9721182 | 9837935 | 9866708" ], [ "99", "SLM:000000323", "Class", "Ceramide (t18:0)", "Cer(t18:0)", "N-acyl-4-hydroxysphinganine | N-acyl-phytosphingosine", "SLM:000399814", null, null, "CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@H](CO)NC([*])=O", null, null, "C19H38NO4R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "31998", null, null, "MNXM731", "11006294 | 11356846 | 11694577 | 11937514 | 15063729 | 20139604 | 20727985 | 9368039 | 9556590" ], [ "100", "SLM:000000324", "Class", "1,2-diacyl-sn-glycero-3-phospho-1D-myo-inositol", "PI", "Phosphatidyl-1D-myo-inositol | Phosphatidylinositol", "SLM:000055216", null, null, "O[C@H]1[C@H](O)[C@@H](O)[C@H](OP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O)[C@H](O)[C@@H]1O", "InChI=none", null, "C11H16O13PR2", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "57880", null, null, "MNXM62", "10079112 | 10101268 | 10497163 | 10531358 | 10625610 | 10805725 | 10848624 | 10888667 | 10931938 | 11277933 | 12890864 | 15140260 | 15588231 | 16123124 | 16162815 | 1644792 | 19075029 | 20332109 | 20727985 | 22322963 | 22822086 | 7531435 | 7628435 | 7654206 | 7890667 | 7961848 | 8407970 | 8454637 | 9235916 | 9337861 | 9368028 | 9407135 | 9463366 | 9830063" ], [ "132", "SLM:000000377", null, "1,2-diacyl-sn-glycero-3-phospho-N-acylethanolamine", null, "1,2-diacyl-sn-glycero-3-phospho-N-acyl-ethanolamine | N-acyl-1,2-diacyl-sn-glycero-3-phosphoethanolamine", "SLM:000001189", null, null, "[O-]P(=O)(OCCNC([*])=O)OC[C@@H](COC([*])=O)OC([*])=O", null, null, "C8H10NO9PR3", "-1.0", "295.1401", null, null, null, null, null, null, null, null, null, null, "62537", null, null, null, "14634025 | 15760304 | 15878693 | 16527816 | 16818490 | 19000777 | 25684574 | 27571266" ], [ "141", "SLM:000000390", "Class", "Ceramide phosphoinositol (d18:0)", "IPC(d18:0)", "Inositol-1-phospho-N-(acyl)-sphinganine | Inositol-1-phosphoceramide (d18:0)", "SLM:000000392", null, null, "CCCCCCCCCCCCCCC[C@@H](O)[C@H](COP([O-])(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O)NC([*])=O", "InChI=none", null, "C25H48NO11PR", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "64941", null, null, null, null ], [ "150", "SLM:000000406", "Isomeric subspecies", "N-(9Z,12Z-octadecadienoyl)-ethanolamine", "NAE (18:2(9Z,12Z))", "(9Z,12Z-octadecadienoyl)-ethanolamide | linoleoyl ethanolamide", "SLM:000000378", null, null, "CCCCC\\C=C/C\\C=C/CCCCCCCC(=O)NCCO", "InChI=1S/C20H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-20(23)21-18-19-22/h6-7,9-10,22H,2-5,8,11-19H2,1H3,(H,21,23)/b7-6-,10-9-", "InChIKey=KQXDGUVSAAQARU-HZJYTTRNSA-N", "C20H37NO2", "0.0", "323.5133", "323.282429", "323.281881", "324.289706", "362.245588", "346.271651", "330.297885", "341.316255", "322.275153", "358.251831", "382.296282", "64032", null, "HMDB12252", null, "12824167 | 21562563" ], [ "151", "SLM:000000407", "Isomeric subspecies", "(9Z,12Z)-octadecadienoate", null, "18:2(9Z,12Z) | Linoleate", "SLM:000389801", null, null, "CCCCC\\C=C/C\\C=C/CCCCCCCC([O-])=O", "InChI=1S/C18H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h6-7,9-10H,2-5,8,11-17H2,1H3,(H,19,20)/p-1/b7-6-,10-9-", "InChIKey=OYHQOLUKZRVURQ-HZJYTTRNSA-M", "C18H31O2", "-1.0", "279.4381", "280.24023", "280.239682", "281.247507", "319.203389", "303.229451", "287.255686", "298.274056", "279.232954", "315.209632", "339.254083", "30245", "LMFA01030120", "HMDB00673", "MNXM293", "10455175 | 10542053 | 10681567 | 10744668 | 10854433 | 11034610 | 11192938 | 11256953 | 11673457 | 12366803 | 12522102 | 12556534 | 12824167 | 14636062 | 14709560 | 14998370 | 15007068 | 15695510 | 16617059 | 16762313 | 16940157 | 17293613 | 18267944 | 18614531 | 18949503 | 19047760 | 19427851 | 19615464 | 21395585 | 21562563 | 21926997 | 22586271 | 22923616 | 22969151 | 23066022 | 23233731 | 23936004 | 24368842 | 24628888 | 25027319 | 25290914 | 25580854 | 26264916 | 29666162 | 8188678 | 8206942 | 8334154 | 8509424 | 9305900 | 9435160 | 9442064 | 9582346 | 9866708" ], [ "152", "SLM:000000408", "Isomeric subspecies", "N-(5Z,8Z,11Z,14Z,17Z-eicosapentaenoyl)-ethanolamine", "NAE (22:5(5Z,8Z,11Z,14Z,17Z))", "(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl ethanolamine | (5Z,8Z,11Z,14Z,17Z-eicosapentaenoyl)-ethanolamide", "SLM:000000378", null, null, "CC\\C=C/C\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCC(=O)NCCO", "InChI=1S/C22H35NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-22(25)23-20-21-24/h3-4,6-7,9-10,12-13,15-16,24H,2,5,8,11,14,17-21H2,1H3,(H,23,25)/b4-3-,7-6-,10-9-,13-12-,16-15-", "InChIKey=OVKKNJPJQKTXIT-JLNKQSITSA-N", "C22H35NO2", "0.0", "345.5188", "345.266779", "345.266231", "346.274056", "384.229938", "368.256", "352.282235", "363.300605", "344.259503", "380.236181", "404.280632", "71467", "LMFA08040008", "HMDB13649", "MNXM51881", "21562563" ], [ "153", "SLM:000000409", "Isomeric subspecies", "(5Z,8Z,11Z,14Z,17Z)-eicosapentaenoate", null, "20:5(5Z,8Z,11Z,14Z,17Z) | Timnodate", "SLM:000389801", null, null, "CC\\C=C/C\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h3-4,6-7,9-10,12-13,15-16H,2,5,8,11,14,17-19H2,1H3,(H,21,22)/p-1/b4-3-,7-6-,10-9-,13-12-,16-15-", "InChIKey=JAZBEHYOTPTENJ-JLNKQSITSA-M", "C20H29O2", "-1.0", "301.4436", "302.22458", "302.224032", "303.231857", "341.187739", "325.213801", "309.240036", "320.258406", "301.217304", "337.193982", "361.238433", "58562", "LMFA01030759", "HMDB01999", "MNXM2801", "10559269 | 10854433 | 11034610 | 11192938 | 15041462 | 15766564 | 16820285 | 17112342 | 18577768 | 19540099 | 19965576 | 21206090 | 21562563 | 22772592 | 22984144 | 24628888 | 26771963 | 9837935" ], [ "154", "SLM:000000410", "Isomeric subspecies", "N-(9Z-hexadecenoyl)-ethanolamine", "NAE (16:1(9Z))", "(9Z-hexadecenoyl)-ethanolamide | N-(9Z-hexadecenoyl) ethanolamine", "SLM:000000378", null, null, "CCCCCC\\C=C/CCCCCCCC(=O)NCCO", "InChI=1S/C18H35NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)19-16-17-20/h7-8,20H,2-6,9-17H2,1H3,(H,19,21)/b8-7-", "InChIKey=WFRLANWAASSSFV-FPLPWBNLSA-N", "C18H35NO2", "0.0", "297.476", "297.266779", "297.266231", "298.274056", "336.229938", "320.256", "304.282235", "315.300605", "296.259503", "332.236181", "356.280632", "71465", null, "HMDB13648", "MNXM67518", "21562563" ], [ "155", "SLM:000000411", "Isomeric subspecies", "(9Z)-hexadecenoate", null, "16:1(9Z) | 9Z-palmitoleate", "SLM:000389821", null, null, "CCCCCC\\C=C/CCCCCCCC([O-])=O", "InChI=1S/C16H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h7-8H,2-6,9-15H2,1H3,(H,17,18)/p-1/b8-7-", "InChIKey=SECPZKHBENQXJG-FPLPWBNLSA-M", "C16H29O2", "-1.0", "253.4008", "254.22458", "254.224032", "255.231857", "293.187739", "277.213801", "261.240036", "272.258406", "253.217304", "289.193982", "313.238433", "32372", "LMFA01030056", "HMDB03229", "MNXM162245", "10493790 | 10850979 | 10854433 | 11477098 | 11673457 | 15007068 | 15619630 | 16940157 | 21562563 | 22586271 | 23066022 | 27018888 | 27036938 | 27509211 | 8206942" ], [ "157", "SLM:000000413", "Class", "Ceramide (d18:1(4E))", "Cer(d18:1(4E))", "N-acyl-sphingosine | N-acylsphing-4-enine | N-acylsphingosine", "SLM:000399814", null, null, "CCCCCCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO)NC([*])=O", "InChI=none", null, "C19H36NO3R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "52639", null, null, "MNXM96425", "10393098 | 10593963 | 10753931 | 10823942 | 11937514 | 12633877 | 12692077 | 12783875 | 12885774 | 14685263 | 14976195 | 15051724 | 15252046 | 15916907 | 17080196 | 17449912 | 17982138 | 18095347 | 18184806 | 1840600 | 20139604 | 20207939 | 22385963 | 24211208 | 25180167 | 26724485 | 8399327 | 8643456 | 8663293 | 8713090 | 8757862 | 9305923" ], [ "160", "SLM:000000418", "Isomeric subspecies", "(9Z)-octadecenoate", null, "18:1(9Z) | Oleate", "SLM:000389821", null, null, "CCCCCCCC\\C=C/CCCCCCCC([O-])=O", "InChI=1S/C18H34O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h9-10H,2-8,11-17H2,1H3,(H,19,20)/p-1/b10-9-", "InChIKey=ZQPPMHVWECSIRJ-KTKRTIGZSA-M", "C18H33O2", "-1.0", "281.454", "282.25588", "282.255332", "283.263157", "321.219039", "305.245101", "289.271336", "300.289706", "281.248604", "317.225282", "341.269733", "30823", "LMFA01030002", "HMDB00207", "MNXM306", "10220579 | 10455175 | 10484737 | 10518211 | 10553002 | 10620324 | 10681567 | 10744668 | 10769148 | 10850979 | 10854433 | 11015575 | 11112443 | 11278489 | 11401559 | 11477098 | 11673457 | 11927584 | 12032167 | 12366803 | 12556534 | 1420353 | 14610053 | 14709560 | 14998370 | 15007068 | 15213221 | 1531641 | 15550674 | 15699031 | 15716583 | 15908428 | 15955102 | 15984864 | 16267052 | 16354661 | 16473965 | 16762313 | 16818490 | 16837646 | 16940157 | 16963437 | 17015445 | 17158102 | 1718995 | 17213206 | 17401110 | 17603008 | 17626977 | 17784850 | 18267944 | 1846745 | 18576672 | 1865764 | 18702514 | 18782767 | 19047760 | 19169353 | 19453107 | 19493158 | 19615464 | 19800417 | 19959834 | 20016004 | 20068046 | 20079333 | 20089856 | 20139604 | 20332534 | 20554061 | 20625037 | 20668164 | 21242590 | 21382969 | 21393252 | 21395585 | 21454566 | 21865348 | 21878620 | 22370951 | 2243091 | 22586271 | 22922100 | 22923616 | 22969151 | 23066022 | 23297193 | 23533611 | 23770034 | 23936004 | 24368842 | 24628888 | 25290914 | 25490545 | 25555908 | 25580854 | 25833688 | 25853435 | 26491015 | 26494624 | 26991558 | 27018888 | 27036938 | 27374330 | 27509211 | 28420705 | 28887301 | 29178188 | 29533650 | 29666162 | 29967167 | 30237167 | 30643283 | 32271712 | 32402239 | 6643478 | 7592706 | 7744740 | 7883976 | 7906114 | 7922029 | 8119970 | 8206942 | 8300559 | 8509424 | 8999922 | 9162045 | 9425121 | 9442064 | 9442065 | 9633819 | 9790682" ], [ "233", "SLM:000000508", "Isomeric subspecies", "(9Z-octadecenoyl)-cholesterol", "CE(18:1(9Z))", "Cholesteryl (9Z-octadecenoate) | Cholesteryl ester (18:1(9Z))", "SLM:000000470", "SLM:000500351", "SLM:000000418 (acyl)", "[H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4C[C@H](CC[C@]4(C)[C@@]3([H])CC[C@]12C)OC(=O)CCCCCCC\\C=C/CCCCCCCC)[C@H](C)CCCC(C)C", "InChI=1S/C45H78O2/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-25-43(46)47-38-30-32-44(5)37(34-38)26-27-39-41-29-28-40(36(4)24-22-23-35(2)3)45(41,6)33-31-42(39)44/h14-15,26,35-36,38-42H,7-13,16-25,27-34H2,1-6H3/b15-14-/t36-,38+,39+,40-,41+,42+,44+,45-/m1/s1", "InChIKey=RJECHNNFRHZQKU-QVENLFBFSA-N", "C45H78O2", "0.0", "651.117", "650.600182", "650.599633", "651.607458", "689.56334", "673.589403", "657.615637", "668.634007", "649.592905", "685.569583", "709.614035", "46898", "LMST01020003", "HMDB00918", "MNXM46582", "11015575 | 11294643 | 14636062 | 15550674 | 15716583 | 1718995 | 17237796 | 18782767 | 20332534 | 20625037 | 24293641 | 27509211 | 32433614 | 9020103 | 9162045 | 9633819 | 9756920 | 9857049" ], [ "248", "SLM:000000533", "Isomeric subspecies", "N-(docosanoyl)-1-O-beta-D-(3-O-sulfo)-galactosyl-sphing-4-enine", "(3'-sulfo)GalCer(d18:1(4E)/22:0)", "1-(3-O-sulfo-beta-D-galactosyl)-N-docosanoylsphingosine | Sulfogalactosyl ceramide (d18:1(4E)/22:0)", "SLM:000001005", "SLM:000395157", "SLM:000000827 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OS([O-])(=O)=O)[C@H]1O)[C@H](O)\\C=C\\CCCCCCCCCCCCC", "InChI=1S/C46H89NO11S/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-24-26-28-30-32-34-36-42(50)47-39(40(49)35-33-31-29-27-25-23-16-14-12-10-8-6-4-2)38-56-46-44(52)45(58-59(53,54)55)43(51)41(37-48)57-46/h33,35,39-41,43-46,48-49,51-52H,3-32,34,36-38H2,1-2H3,(H,47,50)(H,53,54,55)/p-1/b35-33+/t39-,40+,41+,43-,44+,45-,46+/m0/s1", "InChIKey=UAKYQMHTPLVMJD-VKNIJNTKSA-M", "C46H88NO11S", "-1.0", "863.256", "863.615633", "863.615085", "864.62291", "902.578792", "886.604854", "870.631089", "881.649459", "862.608357", "898.585035", "922.629486", "75973", "LMSP06020009", "HMDB12316", "MNXM149964", null ], [ "249", "SLM:000000534", "Isomeric subspecies", "N-(tetracosanoyl)-1-O-beta-D-(3-O-sulfo)-galactosyl-sphing-4-enine", "(3'-sulfo)GalCer(d18:1(4E)/24:0)", "1-(3-O-sulfo-beta-D-galactosyl)-N-tetracosanoylsphingosine | Sulfogalactosyl ceramide (d18:1(4E)/24:0)", "SLM:000001005", "SLM:000395164", "SLM:000000414 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OS([O-])(=O)=O)[C@H]1O)[C@H](O)\\C=C\\CCCCCCCCCCCCC", "InChI=1S/C48H93NO11S/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-26-28-30-32-34-36-38-44(52)49-41(42(51)37-35-33-31-29-27-25-16-14-12-10-8-6-4-2)40-58-48-46(54)47(60-61(55,56)57)45(53)43(39-50)59-48/h35,37,41-43,45-48,50-51,53-54H,3-34,36,38-40H2,1-2H3,(H,49,52)(H,55,56,57)/p-1/b37-35+/t41-,42+,43+,45-,46+,47-,48+/m0/s1", "InChIKey=MEAZTWJVOWHKJM-CIAPRIGGSA-M", "C48H92NO11S", "-1.0", "891.309", "891.646934", "891.646385", "892.65421", "930.610092", "914.636155", "898.662389", "909.680759", "890.639657", "926.616335", "950.660786", "75974", "LMSP06020013", "HMDB00024", "MNXM32456", null ], [ "250", "SLM:000000536", "Isomeric subspecies", "N-(tetracosanoyl)-1-O-beta-D-galactosyl-sphing-4-enine", "GalCer(d18:1(4E)/24:0)", "beta-D-galactosyl-N-(tetracosanoyl)sphingosine | Galactosyl ceramide (d18:1(4E)/24:0)", "SLM:000000926", "SLM:000393884", "SLM:000000414 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)[C@H](O)\\C=C\\CCCCCCCCCCCCC", "InChI=1S/C48H93NO8/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-26-28-30-32-34-36-38-44(52)49-41(40-56-48-47(55)46(54)45(53)43(39-50)57-48)42(51)37-35-33-31-29-27-25-16-14-12-10-8-6-4-2/h35,37,41-43,45-48,50-51,53-55H,3-34,36,38-40H2,1-2H3,(H,49,52)/b37-35+/t41-,42+,43+,45-,46-,47+,48+/m0/s1", "InChIKey=POQRWMRXUOPCLD-HIIAJUEOSA-N", "C48H93NO8", "0.0", "812.2539", "811.690119", "811.68957", "812.697395", "850.653277", "834.67934", "818.705574", "829.723945", "810.682843", "846.65952", "870.703972", "75186", "LMSP0501AC05", null, "MNXM54215", null ], [ "263", "SLM:000000550", "Isomeric subspecies", "(6Z)-hexadecenoate", null, "16:1(6Z) | Sapienate", "SLM:000389821", null, null, "CCCCCCCCC\\C=C/CCCCC([O-])=O", "InChI=1S/C16H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h10-11H,2-9,12-15H2,1H3,(H,17,18)/p-1/b11-10-", "InChIKey=NNNVXFKZMRGJPM-KHPPLWFESA-M", "C16H29O2", "-1.0", "253.4008", "254.22458", "254.224032", "255.231857", "293.187739", "277.213801", "261.240036", "272.258406", "253.217304", "289.193982", "313.238433", "76197", "LMFA01030267", null, "MNXM15061", "12713571" ], [ "266", "SLM:000000554", "Isomeric subspecies", "N-(hexadecanoyl)-sphing-4-enine", "Cer(d18:1(4E)/16:0)", "Ceramide (d18:1(4E)/16:0) | N-hexadecanoylsphingosine", "SLM:000000413", "SLM:000392131", "SLM:000000510 (n-acyl)", "CCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCCCCC", "InChI=1S/C34H67NO3/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-33(37)32(31-36)35-34(38)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h27,29,32-33,36-37H,3-26,28,30-31H2,1-2H3,(H,35,38)/b29-27+/t32-,33+/m0/s1", "InChIKey=YDNKGFDKKRUKPY-TURZORIXSA-N", "C34H67NO3", "0.0", "537.9007", "537.512095", "537.511546", "538.519371", "576.475253", "560.501316", "544.52755", "555.545921", "536.504819", "572.481496", "596.525948", "72959", "LMSP02010004", "HMDB04949", "MNXM82547", "10652340 | 10702247 | 10781606 | 11278489 | 12764132 | 12912983 | 14685229 | 15655246 | 16269826 | 16689792 | 17475390 | 18184806 | 20089856 | 20139604 | 20378533 | 21550973 | 23275342 | 31916624" ], [ "267", "SLM:000000555", "Isomeric subspecies", "N-(octadecanoyl)-sphing-4-enine", "Cer(d18:1(4E)/18:0)", "Ceramide (d18:1(4E)/18:0) | N-octadecanoylsphingosine", "SLM:000000413", "SLM:000392135", "SLM:000000826 (n-acyl)", "CCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCCCCC", "InChI=1S/C36H71NO3/c1-3-5-7-9-11-13-15-17-18-20-22-24-26-28-30-32-36(40)37-34(33-38)35(39)31-29-27-25-23-21-19-16-14-12-10-8-6-4-2/h29,31,34-35,38-39H,3-28,30,32-33H2,1-2H3,(H,37,40)/b31-29+/t34-,35+/m0/s1", "InChIKey=VODZWWMEJITOND-NXCSZAMKSA-N", "C36H71NO3", "0.0", "565.9538", "565.543395", "565.542847", "566.550672", "604.506553", "588.532616", "572.558851", "583.577221", "564.536119", "600.512796", "624.557248", "72961", "LMSP02010006", "HMDB04950", "MNXM46113", "10652340 | 12764132 | 12912983 | 18184806 | 20089856 | 20139604 | 23275342 | 25339683 | 31916624 | 7744740" ], [ "273", "SLM:000000561", "Isomeric subspecies", "N-(docosanoyl)-15-methylhexadecasphinganine", "Cer(iso-d17:0/22:0)", "Ceramide (iso-d17:0/22:0) | N-docosanoyl-15-methylhexadecasphinganine", "SLM:000000251", "SLM:000391957", "SLM:000000827 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)CCCCCCCCCCCC(C)C", "InChI=1S/C39H79NO3/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-22-25-28-31-34-39(43)40-37(35-41)38(42)33-30-27-24-21-19-20-23-26-29-32-36(2)3/h36-38,41-42H,4-35H2,1-3H3,(H,40,43)/t37-,38+/m0/s1", "InChIKey=HCXNRGLMSHTQGH-QPPIDDCLSA-N", "C39H79NO3", "0.0", "610.0495", "609.605995", "609.605447", "610.613272", "648.569154", "632.595216", "616.621451", "627.639821", "608.598719", "644.575397", "668.619848", "74178", null, null, "MNXM158520", null ], [ "278", "SLM:000000569", "Isomeric subspecies", "1-O-hexadecyl-sn-glycero-3-phosphocholine", "PC(O-16:0/0:0)", "1-hexadecyl-sn-glycero-3-phosphocholine | Phosphatidylcholine (O-16:0/0:0)", "SLM:000000448", "SLM:000092101", "SLM:000000202 (sn1)", "CCCCCCCCCCCCCCCCOC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C", "InChI=1S/C24H52NO6P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-20-29-22-24(26)23-31-32(27,28)30-21-19-25(2,3)4/h24,26H,5-23H2,1-4H3/t24-/m1/s1", "InChIKey=VLBPIWYTPAXCFJ-XMMPIXPASA-N", "C24H52NO6P", "0.0", "481.646515", "481.35321", "481.352661", "482.360504", "520.316406", "504.342438", "488.368683", "499.387054", null, "516.322632", "540.367065", "64496", "LMGP01060010", null, "MNXM60417", "10085103 | 10358058 | 10542206 | 10608884 | 12176993 | 16704971 | 17182612 | 17293613 | 18285344 | 18458083 | 21926997 | 25528375 | 7673213 | 7794891 | 9442064" ], [ "304", "SLM:000000601", "Isomeric subspecies", "N-(2-hydroxytetracosanoyl)-sphinganine", "Cer(d18:0/24:0(2OH)) | Cer(d18:0/24:0-2OH)", "Ceramide (d18:0/24:0(2OH)) | N-(2-hydroxytetracosanoyl)-sphinganine | N-2-hydroxytetracosanoyl-sphinganine", "SLM:000000285", null, "SLM:000000830 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)CCCCCCCCCCCCCCC", "InChI=1S/C42H85NO4/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-25-27-29-31-33-35-37-41(46)42(47)43-39(38-44)40(45)36-34-32-30-28-26-24-16-14-12-10-8-6-4-2/h39-41,44-46H,3-38H2,1-2H3,(H,43,47)/t39-,40+,41?/m0/s1", "InChIKey=DGORBCXEWSENPF-MOKHYRRWSA-N", "C42H85NO4", "0.0", "668.145", "667.64786", "667.647312", "668.655137", "706.611019", "690.637081", "674.663316", "685.681686", "666.640584", "702.617262", "726.661713", "52371", "LMSP02020033", null, null, "18541923" ], [ "306", "SLM:000000603", "Isomeric subspecies", "N-(2-hydroxydocosanoyl)-sphinganine", "Cer(d18:0/22:0(2OH)) | Cer(d18:0/22:0-2OH)", "Ceramide (d18:0/22:0(2OH)) | N-(2-hydroxydocosanoyl)-sphinganine | N-2-hydroxydocosanoyl-sphinganine", "SLM:000000285", null, "SLM:000000828 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)CCCCCCCCCCCCCCC", "InChI=1S/C40H81NO4/c1-3-5-7-9-11-13-15-17-18-19-20-21-23-25-27-29-31-33-35-39(44)40(45)41-37(36-42)38(43)34-32-30-28-26-24-22-16-14-12-10-8-6-4-2/h37-39,42-44H,3-36H2,1-2H3,(H,41,45)/t37-,38+,39?/m0/s1", "InChIKey=NNLQQNODNROHPW-BFNXHEPRSA-N", "C40H81NO4", "0.0", "640.091", "639.61656", "639.616012", "640.623837", "678.579718", "662.605781", "646.632016", "657.650386", "638.609284", "674.585961", "698.630413", "67023", "LMSP02020032", null, "MNXM106875", "18541923" ], [ "308", "SLM:000000605", "Isomeric subspecies", "N-(2-hydroxyoctadecanoyl)-sphinganine", "Cer(d18:0/18:0(2OH)) | Cer(d18:0/18:0-2OH)", "Ceramide (d18:0/18:0(2OH)) | N-(2-hydroxyoctadecanoyl)-sphinganine | N-2-hydroxyoctadecanoyl-sphinganine", "SLM:000000285", null, "SLM:000000831 (n-acyl)", "CCCCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)CCCCCCCCCCCCCCC", "InChI=1S/C36H73NO4/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-35(40)36(41)37-33(32-38)34(39)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h33-35,38-40H,3-32H2,1-2H3,(H,37,41)/t33-,34+,35?/m0/s1", "InChIKey=TWVUZTCVZAHCIE-GWDKEWMYSA-N", "C36H73NO4", "0.0", "583.983", "583.55396", "583.553411", "584.561236", "622.517118", "606.543181", "590.569415", "601.587785", "582.546683", "618.523361", "642.567813", "67034", "LMSP02020030", null, null, "18541923" ], [ "310", "SLM:000000607", "Isomeric subspecies", "N-(2-hydroxyhexadecanoyl)-sphinganine", "Cer(d18:0/16:0(2OH)) | Cer(d18:0/16:0-2OH)", "Ceramide (d18:0/16:0(2OH)) | N-(2-hydroxyhexadecanoyl)-sphinganine | N-2-hydroxyhexadecanoyl-sphinganine", "SLM:000000285", null, "SLM:000000389 (n-acyl)", "CCCCCCCCCCCCCCC[C@@H](O)[C@H](CO)NC(=O)C(O)CCCCCCCCCCCCCC", "InChI=1S/C34H69NO4/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-32(37)31(30-36)35-34(39)33(38)29-27-25-23-21-18-16-14-12-10-8-6-4-2/h31-33,36-38H,3-30H2,1-2H3,(H,35,39)/t31-,32+,33?/m0/s1", "InChIKey=NQXMVCBJWMTLGK-XIWRNSNHSA-N", "C34H69NO4", "0.0", "555.929", "555.52266", "555.522111", "556.529936", "594.485818", "578.511881", "562.538115", "573.556485", "554.515383", "590.492061", "614.536513", "67043", "LMSP02020029", null, null, "18541923" ], [ "330", "SLM:000000634", "Isomeric subspecies", "N-(tetracosanoyl)-sphing-4-enine", "Cer(d18:1(4E)/24:0)", "Ceramide (d18:1(4E)/24:0) | N-tetracosanoylsphingosine", "SLM:000000413", "SLM:000392156", "SLM:000000414 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCCCCC", "InChI=1S/C42H83NO3/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-26-28-30-32-34-36-38-42(46)43-40(39-44)41(45)37-35-33-31-29-27-25-16-14-12-10-8-6-4-2/h35,37,40-41,44-45H,3-34,36,38-39H2,1-2H3,(H,43,46)/b37-35+/t40-,41+/m0/s1", "InChIKey=ZJVVOYPTFQEGPH-AUTSUKAISA-N", "C42H83NO3", "0.0", "650.1133", "649.637296", "649.636747", "650.644572", "688.600454", "672.626517", "656.652751", "667.671121", "648.630019", "684.606697", "708.651148", "72965", "LMSP02010012", "HMDB04956", "MNXM46116", "15051724 | 17713573 | 20089856 | 20139604 | 20937905" ], [ "382", "SLM:000000693", "Isomeric subspecies", "1-O-octadecyl-sn-glycero-3-phosphocholine", "PC(O-18:0/0:0)", "1-octadecyl-sn-glycero-3-phosphocholine | Phosphatidylcholine (O-18:0/0:0)", "SLM:000000448", "SLM:000092231", "SLM:000000583 (sn1)", "CCCCCCCCCCCCCCCCCCOC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C", "InChI=1S/C26H56NO6P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-22-31-24-26(28)25-33-34(29,30)32-23-21-27(2,3)4/h26,28H,5-25H2,1-4H3/t26-/m1/s1", "InChIKey=XKBJVQHMEXMFDZ-AREMUKBSSA-N", "C26H56NO6P", "0.0", "509.699707", "509.384521", "509.383972", "510.391815", "548.347656", "532.373718", "516.399963", "527.418335", null, "544.353943", "568.398376", "75216", "LMGP01060014", "HMDB11149", "MNXM60770", "10504265 | 10608884 | 14741383 | 16704971 | 17182612" ], [ "386", "SLM:000000698", "Isomeric subspecies", "1-O-hexadecyl-2-acetyl-sn-glycero-3-phosphocholine", "PC(O-16:0/2:0)", "1-hexadecyl-2-acetyl-sn-glycero-3-phosphocholine | Phosphatidylcholine (O-16:0/2:0)", "SLM:000000574", "SLM:000092146", "SLM:000000202 (sn1) / SLM:000000449 (sn2)", "[H]CC(=O)O[C@H](COCCCCCCCCCCCCCCCC)COP([O-])(=O)OCC[N+](C)(C)C", "InChI=1S/C26H54NO7P/c1-6-7-8-9-10-11-12-13-14-15-16-17-18-19-21-31-23-26(34-25(2)28)24-33-35(29,30)32-22-20-27(3,4)5/h26H,6-24H2,1-5H3/t26-/m1/s1", "InChIKey=HVAUUPRFYPCOCA-AREMUKBSSA-N", "C26H54NO7P", "0.0", "523.683228", "523.36377", "523.36322", "524.371094", "562.326965", "546.353027", "530.379272", "541.397644", null, "558.333191", "582.377625", "44811", "LMGP01020046", null, "MNXM7624", "10085103 | 10542206 | 10893425 | 11560941 | 17182612 | 18285344 | 21926997 | 26757638" ], [ "388", "SLM:000000700", "Isomeric subspecies", "1-O-hexadecyl-2-hexadecanoyl-sn-glycero-3-phosphocholine", "PC(O-16:0/16:0)", "1-hexadecyl-2-hexadecanoyl-sn-glycero-3-phosphocholine | Phosphatidylcholine (O-16:0/16:0)", "SLM:000000574", "SLM:000092108", "SLM:000000202 (sn1) / SLM:000000510 (sn2)", "CCCCCCCCCCCCCCCCOC[C@H](COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCCCC", "InChI=1S/C40H82NO7P/c1-6-8-10-12-14-16-18-20-22-24-26-28-30-32-35-45-37-39(38-47-49(43,44)46-36-34-41(3,4)5)48-40(42)33-31-29-27-25-23-21-19-17-15-13-11-9-7-2/h39H,6-38H2,1-5H3/t39-/m1/s1", "InChIKey=WOTHHEHCEYHCFE-LDLOPFEMSA-N", "C40H82NO7P", "0.0", "720.055298", "719.582886", "719.582336", "720.590149", "758.546021", "742.572083", "726.598328", "737.616699", null, "754.552307", "778.596741", "72744", "LMGP01020029", null, "MNXM70796", "16704971 | 18285344" ], [ "389", "SLM:000000702", "Isomeric subspecies", "1-O-octadecyl-2-hexadecanoyl-sn-glycero-3-phosphocholine", "PC(O-18:0/16:0)", "1-octadecyl-2-hexadecanoyl-sn-glycero-3-phosphocholine | Phosphatidylcholine (O-18:0/16:0)", "SLM:000000574", "SLM:000092238", "SLM:000000510 (sn2) / SLM:000000583 (sn1)", "CCCCCCCCCCCCCCCCCCOC[C@H](COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCCCC", "InChI=1S/C42H86NO7P/c1-6-8-10-12-14-16-18-20-21-22-24-26-28-30-32-34-37-47-39-41(40-49-51(45,46)48-38-36-43(3,4)5)50-42(44)35-33-31-29-27-25-23-19-17-15-13-11-9-7-2/h41H,6-40H2,1-5H3/t41-/m1/s1", "InChIKey=GTFLTTXDLGEBAI-VQJSHJPSSA-N", "C42H86NO7P", "0.0", "748.108521", "747.614197", "747.613647", "748.62146", "786.577332", "770.603394", "754.629639", "765.64801", null, "782.583618", "806.628052", "75290", "LMGP01020086", null, "MNXM70860", "16704971" ], [ "506", "SLM:000000829", "Isomeric subspecies", "eicosanoate", null, "Arachidate | Icosanoate", "SLM:000389800", null, null, "CCCCCCCCCCCCCCCCCCCC([O-])=O", "InChI=1S/C20H40O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h2-19H2,1H3,(H,21,22)/p-1", "InChIKey=VKOBVWXKNCXXDE-UHFFFAOYSA-M", "C20H39O2", "-1.0", "311.523", "312.302831", "312.302282", "313.310107", "351.265989", "335.292052", "319.318286", "330.336656", "311.295554", "347.272232", "371.316683", "32360", "LMFA01010020", "HMDB02212", "MNXM2976", "10479480 | 10944470 | 11673457 | 12810727 | 15007068 | 16940157 | 20089856 | 20139604" ], [ "513", "SLM:000000836", "Class", "Ins-1-P-6-Man-1-2-Ins-1-P-Cer", "M(IP)2C", "Inositol phosphomannosylinositol-1-phosphoceramide | mannosyl diphosphorylinositol ceramide", "SLM:000000834 | SLM:000399815", null, null, "O[C@H]([*])[C@H](COP([O-])(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1OC1O[C@H](COP([O-])(=O)O[C@H]2[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@@H]1O)NC([*])=O", "InChI=none", null, "C22H37NO24P2R2", "-2.0", null, null, null, null, null, null, null, null, null, null, null, "74997", null, null, null, "10931938 | 20727985 | 22322963" ], [ "514", "SLM:000000838", "Isomeric subspecies", "N-(2-hydroxyhexadecanoyl)-sphing-4-enine", "Cer(d18:1(4E)/16:0-2OH)", "N-(2-hydroxyhexadecanoyl)-sphingosine | Cer(d18:1(4E)/16:1(9Z))", "SLM:000000413", null, null, "CCCCCCCCCCCCCCC(O)C(=O)N[C@@H](CO)[C@H](O)C=CCCCCCCCCCCCCC", "InChI=1S/C34H67NO4/c1-3-5-7-9-11-13-15-17-19-20-22-24-26-28-32(37)31(30-36)35-34(39)33(38)29-27-25-23-21-18-16-14-12-10-8-6-4-2/h26,28,31-33,36-38H,3-25,27,29-30H2,1-2H3,(H,35,39)/b28-26+/t31-,32+,33?/m0/s1", "YWZGQPJRQXHVQX-HOXYDHSRSA-N", "C34H67NO4", "0.0", "553.9001", null, null, null, null, null, null, null, null, null, null, "76751", null, null, null, "15337768" ], [ "556", "SLM:000000896", "Isomeric subspecies", "N-(docosanoyl)-sphing-4-enine", "Cer(d18:1(4E)/22:0)", "Ceramide (d18:1(4E)/22:0) | N-docosanoylsphingosine", "SLM:000000413", "SLM:000392149", "SLM:000000827 (n-acyl)", "CCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C=C\\CCCCCCCCCCCCC", "InChI=1S/C40H79NO3/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-24-26-28-30-32-34-36-40(44)41-38(37-42)39(43)35-33-31-29-27-25-23-16-14-12-10-8-6-4-2/h33,35,38-39,42-43H,3-32,34,36-37H2,1-2H3,(H,41,44)/b35-33+/t38-,39+/m0/s1", "InChIKey=KEPQASGDXIEOIL-GLQCRSEXSA-N", "C40H79NO3", "0.0", "622.0602", "621.605995", "621.605447", "622.613272", "660.569154", "644.595216", "628.621451", "639.639821", "620.598719", "656.575397", "680.619848", "72966", "LMSP02010008", "HMDB04952", "MNXM46115", null ], [ "559", "SLM:000000903", "Class", "Ceramide phosphate (d18:1(4E))", "CerP(d18:1(4E))", "N-acyl-sphingosine 1-phosphate | N-acylsphing-4-enine-1-phosphate | N-acylsphingosine 1-phosphate", "SLM:000399705", null, null, "CCCCCCCCCCCCC\\C=C\\[C@@H](O)[C@H](COP([O-])([O-])=O)NC([*])=O", "InChI=none", null, "C19H35NO6PR", "-2.0", null, null, null, null, null, null, null, null, null, null, null, "57674", null, null, "MNXM972", "15252046 | 8663293 | 9305923" ], [ "569", "SLM:000000926", "Class", "Galactosyl ceramide (d18:1(4E))", "GalCer(d18:1(4E))", "Galactosyl ceramide(d18:1(4E)) | N-acyl-1-O-beta-D-galactosyl-sphing-4-enine", "SLM:000389698 | SLM:000399707", null, null, "C(=C/CCCCCCCCCCCCC)[C@@H](O)[C@@H](NC(=O)*)CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O", null, null, "C25H46NO8R", "0.0", "488.636", null, null, null, null, null, null, null, null, null, null, "18390", null, null, "MNXM521765", "16934889 | 23532839 | 24294900 | 8399327 | 8713090 | 8830034" ], [ "572", "SLM:000000930", "Isomeric subspecies", "(11Z)-eicosenoate", null, "20:1(11Z) | Cis-gondoate", "SLM:000389821", null, null, "CCCCCCCC\\C=C/CCCCCCCCCC([O-])=O", "InChI=1S/C20H38O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h9-10H,2-8,11-19H2,1H3,(H,21,22)/p-1/b10-9-", "InChIKey=BITHHVVYSMSWAG-KTKRTIGZSA-M", "C20H37O2", "-1.0", "309.5071", "310.287181", "310.286632", "311.294457", "349.250339", "333.276402", "317.302636", "328.321006", "309.279904", "345.256582", "369.301033", "32426", "LMFA01030085", "HMDB02231", "MNXM7404", "20068046" ] ], "shape": { "columns": 29, "rows": 19853 } }, "text/html": [ "
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Lipid IDLevelNameAbbreviation*Synonyms*Lipid class*ParentComponents*SMILES (pH7.3)InChI (pH7.3)...Exact m/z of [M+Li]+Exact m/z of [M+NH4]+Exact m/z of [M-H]-Exact m/z of [M+Cl]-Exact m/z of [M+OAc]-CHEBILIPID MAPSHMDBMetaNetXPMID
11SLM:000000101Class1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero...PA1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero...SLM:000477285NaNNaNO[C@@H](COP([O-])([O-])=O)COP([O-])(=O)OC[C@@H...InChI=none...NaNNaNNaNNaNNaN60110NaNNaNMNXM87120485265 | 9880566
17SLM:000000147Isomeric subspeciesN-(9Z-octadecenoyl)-ethanolamineNAE (18:1(9Z))(9Z-octadecenoyl)-ethanolamide | N-(9Z-octadec...SLM:000000378NaNNaNCCCCCCCC\\C=C/CCCCCCCC(=O)NCCOInChI=1S/C20H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12......332.313535343.331905324.290803360.267481384.31193271466NaNHMDB02088MNXM10738614634025 | 16527816 | 17015445 | 17626977 | 17...
18SLM:000000149Isomeric subspeciesN-hexadecanoyl-ethanolamineNAE (16:0)hexadecanoyl-ethanolamide | N-hexadecanoyl eth...SLM:000000378NaNNaNCCCCCCCCCCCCCCCC(=O)NCCOInChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12......306.297885317.316255298.275153334.251831358.29628271464NaNHMDB02100MNXM10754812824167 | 14634025 | 15655246 | 15760304 | 16...
19SLM:000000178Isomeric subspeciesN-(docosanoyl)-15-methylhexadecasphing-4-enineCer(iso-d17:1(4E)/22:0)Ceramide (iso-d17:1(4E)/22:0) | N-docosanoyl-1...SLM:000000002SLM:000392021SLM:000000827 (n-acyl)CCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\...InChI=1S/C39H77NO3/c1-4-5-6-7-8-9-10-11-12-13-......614.605801625.624171606.583069642.559747666.60419871377NaNNaNMNXM10702619372430
20SLM:000000179Isomeric subspeciesN-(heneicosanoyl)-15-methylhexadecasphing-4-enineCer(iso-d17:1(4E)/21:0)Ceramide (iso-d17:1(4E)/21:0) | N-henicosanoyl...SLM:000000002SLM:000392020SLM:000001207 (n-acyl)CCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C...InChI=1S/C38H75NO3/c1-4-5-6-7-8-9-10-11-12-13-......600.590151611.608521592.567419628.544097652.58854871375NaNNaNMNXM10703619372430
..................................................................
745092SLM:000747954Isomeric subspeciesCDP-1,2-di-(13-methyltetradecanoyl)-sn-glycerolCDP-DAG (iso15:0/iso15:0)1,2-di-(13-methyltetradecanoyl)-sn-glycero-3-c...SLM:000000084NaNSLM:000000047 (sn1 or sn2)[H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(...InChI=1S/C42H77N3O15P2/c1-32(2)23-19-15-11-7-5......932.498448943.516818924.475716960.452394984.496846NaNNaNHMDB0116214NaNNaN
745093SLM:000747955Isomeric subspeciesCDP-1-(13-methyltetradecanoyl)-2-(15-methylhex...CDP-DAG (iso15:0/iso17:0)1-(13-methyltetradecanoyl)-2-(15-methylhexadec...SLM:000000084NaNSLM:000000047 (sn1) / SLM:000000048 (sn2)[H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(...InChI=1S/C44H81N3O15P2/c1-34(2)25-21-17-13-9-6......960.529748971.548118952.507016988.4836941012.528146NaNNaNHMDB0116216NaNNaN
745175SLM:000748037Isomeric subspeciesCDP-1-(15-methylhexadecanoyl)-2-(11-methyldode...CDP-DAG (iso17:0/iso13:0)1-(15-methylhexadecanoyl)-2-(11-methyldodecano...SLM:000000084NaNSLM:000000048 (sn1) / SLM:000001197 (sn2)[H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(...InChI=1S/C42H77N3O15P2/c1-32(2)23-19-15-11-8-6......932.498448943.516818924.475716960.452394984.496846NaNNaNHMDB0116248NaNNaN
745176SLM:000748038Isomeric subspeciesCDP-1-(15-methylhexadecanoyl)-2-(13-methyltetr...CDP-DAG (iso17:0/iso15:0)1-(15-methylhexadecanoyl)-2-(13-methyltetradec...SLM:000000084NaNSLM:000000047 (sn2) / SLM:000000048 (sn1)[H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(...InChI=1S/C44H81N3O15P2/c1-34(2)25-21-17-13-9-6......960.529748971.548118952.507016988.4836941012.528146NaNNaNHMDB0116250NaNNaN
745177SLM:000748039Isomeric subspeciesCDP-1,2-di-(15-methylhexadecanoyl)-sn-glycerolCDP-DAG (iso17:0/iso17:0)1,2-di-(15-methylhexadecanoyl)-sn-glycero-3-cy...SLM:000000084NaNSLM:000000048 (sn1 or sn2)[H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(...InChI=1S/C46H85N3O15P2/c1-36(2)27-23-19-15-11-......988.561049999.579419980.5383171016.5149941040.559446NaNNaNHMDB0116252NaNNaN
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19853 rows × 29 columns

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" ], "text/plain": [ " Lipid ID Level \\\n", "11 SLM:000000101 Class \n", "17 SLM:000000147 Isomeric subspecies \n", "18 SLM:000000149 Isomeric subspecies \n", "19 SLM:000000178 Isomeric subspecies \n", "20 SLM:000000179 Isomeric subspecies \n", "... ... ... \n", "745092 SLM:000747954 Isomeric subspecies \n", "745093 SLM:000747955 Isomeric subspecies \n", "745175 SLM:000748037 Isomeric subspecies \n", "745176 SLM:000748038 Isomeric subspecies \n", "745177 SLM:000748039 Isomeric subspecies \n", "\n", " Name \\\n", "11 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero... \n", "17 N-(9Z-octadecenoyl)-ethanolamine \n", "18 N-hexadecanoyl-ethanolamine \n", "19 N-(docosanoyl)-15-methylhexadecasphing-4-enine \n", "20 N-(heneicosanoyl)-15-methylhexadecasphing-4-enine \n", "... ... \n", "745092 CDP-1,2-di-(13-methyltetradecanoyl)-sn-glycerol \n", "745093 CDP-1-(13-methyltetradecanoyl)-2-(15-methylhex... \n", "745175 CDP-1-(15-methylhexadecanoyl)-2-(11-methyldode... \n", "745176 CDP-1-(15-methylhexadecanoyl)-2-(13-methyltetr... \n", "745177 CDP-1,2-di-(15-methylhexadecanoyl)-sn-glycerol \n", "\n", " Abbreviation* \\\n", "11 PA \n", "17 NAE (18:1(9Z)) \n", "18 NAE (16:0) \n", "19 Cer(iso-d17:1(4E)/22:0) \n", "20 Cer(iso-d17:1(4E)/21:0) \n", "... ... \n", "745092 CDP-DAG (iso15:0/iso15:0) \n", "745093 CDP-DAG (iso15:0/iso17:0) \n", "745175 CDP-DAG (iso17:0/iso13:0) \n", "745176 CDP-DAG (iso17:0/iso15:0) \n", "745177 CDP-DAG (iso17:0/iso17:0) \n", "\n", " Synonyms* Lipid class* \\\n", "11 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero... SLM:000477285 \n", "17 (9Z-octadecenoyl)-ethanolamide | N-(9Z-octadec... SLM:000000378 \n", "18 hexadecanoyl-ethanolamide | N-hexadecanoyl eth... SLM:000000378 \n", "19 Ceramide (iso-d17:1(4E)/22:0) | N-docosanoyl-1... SLM:000000002 \n", "20 Ceramide (iso-d17:1(4E)/21:0) | N-henicosanoyl... SLM:000000002 \n", "... ... ... \n", "745092 1,2-di-(13-methyltetradecanoyl)-sn-glycero-3-c... SLM:000000084 \n", "745093 1-(13-methyltetradecanoyl)-2-(15-methylhexadec... SLM:000000084 \n", "745175 1-(15-methylhexadecanoyl)-2-(11-methyldodecano... SLM:000000084 \n", "745176 1-(15-methylhexadecanoyl)-2-(13-methyltetradec... SLM:000000084 \n", "745177 1,2-di-(15-methylhexadecanoyl)-sn-glycero-3-cy... SLM:000000084 \n", "\n", " Parent Components* \\\n", "11 NaN NaN \n", "17 NaN NaN \n", "18 NaN NaN \n", "19 SLM:000392021 SLM:000000827 (n-acyl) \n", "20 SLM:000392020 SLM:000001207 (n-acyl) \n", "... ... ... \n", "745092 NaN SLM:000000047 (sn1 or sn2) \n", "745093 NaN SLM:000000047 (sn1) / SLM:000000048 (sn2) \n", "745175 NaN SLM:000000048 (sn1) / SLM:000001197 (sn2) \n", "745176 NaN SLM:000000047 (sn2) / SLM:000000048 (sn1) \n", "745177 NaN SLM:000000048 (sn1 or sn2) \n", "\n", " SMILES (pH7.3) \\\n", "11 O[C@@H](COP([O-])([O-])=O)COP([O-])(=O)OC[C@@H... \n", "17 CCCCCCCC\\C=C/CCCCCCCC(=O)NCCO \n", "18 CCCCCCCCCCCCCCCC(=O)NCCO \n", "19 CCCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\... \n", "20 CCCCCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO)[C@H](O)\\C... \n", "... ... \n", "745092 [H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(... \n", "745093 [H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(... \n", "745175 [H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(... \n", "745176 [H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(... \n", "745177 [H]Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(... \n", "\n", " InChI (pH7.3) ... \\\n", "11 InChI=none ... \n", "17 InChI=1S/C20H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12... ... \n", "18 InChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12... ... \n", "19 InChI=1S/C39H77NO3/c1-4-5-6-7-8-9-10-11-12-13-... ... \n", "20 InChI=1S/C38H75NO3/c1-4-5-6-7-8-9-10-11-12-13-... ... \n", "... ... ... \n", "745092 InChI=1S/C42H77N3O15P2/c1-32(2)23-19-15-11-7-5... ... \n", "745093 InChI=1S/C44H81N3O15P2/c1-34(2)25-21-17-13-9-6... ... \n", "745175 InChI=1S/C42H77N3O15P2/c1-32(2)23-19-15-11-8-6... ... \n", "745176 InChI=1S/C44H81N3O15P2/c1-34(2)25-21-17-13-9-6... ... \n", "745177 InChI=1S/C46H85N3O15P2/c1-36(2)27-23-19-15-11-... ... \n", "\n", " Exact m/z of [M+Li]+ Exact m/z of [M+NH4]+ Exact m/z of [M-H]- \\\n", "11 NaN NaN NaN \n", "17 332.313535 343.331905 324.290803 \n", "18 306.297885 317.316255 298.275153 \n", "19 614.605801 625.624171 606.583069 \n", "20 600.590151 611.608521 592.567419 \n", "... ... ... ... \n", "745092 932.498448 943.516818 924.475716 \n", "745093 960.529748 971.548118 952.507016 \n", "745175 932.498448 943.516818 924.475716 \n", "745176 960.529748 971.548118 952.507016 \n", "745177 988.561049 999.579419 980.538317 \n", "\n", " Exact m/z of [M+Cl]- Exact m/z of [M+OAc]- CHEBI LIPID MAPS \\\n", "11 NaN NaN 60110 NaN \n", "17 360.267481 384.311932 71466 NaN \n", "18 334.251831 358.296282 71464 NaN \n", "19 642.559747 666.604198 71377 NaN \n", "20 628.544097 652.588548 71375 NaN \n", "... ... ... ... ... \n", "745092 960.452394 984.496846 NaN NaN \n", "745093 988.483694 1012.528146 NaN NaN \n", "745175 960.452394 984.496846 NaN NaN \n", "745176 988.483694 1012.528146 NaN NaN \n", "745177 1016.514994 1040.559446 NaN NaN \n", "\n", " HMDB MetaNetX \\\n", "11 NaN MNXM871 \n", "17 HMDB02088 MNXM107386 \n", "18 HMDB02100 MNXM107548 \n", "19 NaN MNXM107026 \n", "20 NaN MNXM107036 \n", "... ... ... \n", "745092 HMDB0116214 NaN \n", "745093 HMDB0116216 NaN \n", "745175 HMDB0116248 NaN \n", "745176 HMDB0116250 NaN \n", "745177 HMDB0116252 NaN \n", "\n", " PMID \n", "11 20485265 | 9880566 \n", "17 14634025 | 16527816 | 17015445 | 17626977 | 17... \n", "18 12824167 | 14634025 | 15655246 | 15760304 | 16... \n", "19 19372430 \n", "20 19372430 \n", "... ... \n", "745092 NaN \n", "745093 NaN \n", "745175 NaN \n", "745176 NaN \n", "745177 NaN \n", "\n", "[19853 rows x 29 columns]" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "Checking split characters (|) in Lipid class*\n", "Found 119 rows with split characters\n" ] }, { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "unknown" }, { "name": "Name", "rawType": "object", "type": "string" }, { "name": "Abbreviation*", "rawType": "object", "type": "unknown" }, { "name": "Synonyms*", "rawType": "object", "type": "unknown" }, { "name": "Lipid class*", "rawType": "object", "type": "string" }, { "name": "Parent", "rawType": "object", "type": "unknown" }, { "name": "Components*", "rawType": "object", "type": "unknown" }, { "name": "SMILES (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Cl]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+OAc]- ", "rawType": "float64", "type": "float" }, { "name": "CHEBI", "rawType": "object", "type": "unknown" }, { "name": "LIPID MAPS", "rawType": "object", "type": "unknown" }, { "name": "HMDB", "rawType": "object", "type": "unknown" }, { "name": "MetaNetX", "rawType": "object", "type": "unknown" }, { "name": "PMID", "rawType": "object", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "893e35a1-3ae7-4524-8cf6-1ff788353baa", "rows": [ [ "142", "SLM:000000392", "Class", "Ceramide phosphoinositol", "IPC", "Inositol-1-phosphoceramide", "SLM:000000834 | SLM:000399815", null, null, "O[C@H]([*])[C@H](COP([O-])(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O)NC([*])=O", "InChI=none", null, "C10H17NO11PR2", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "64916", null, null, null, "10888667 | 20727985" ], [ "234", "SLM:000000509", "Isomeric subspecies", "All-trans-retinyl hexadecanoate", null, "all-trans-retinyl palmitate", "SLM:000000982 | SLM:000508854", null, null, "CCCCCCCCCCCCCCCC(=O)OCC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C", "InChI=1S/C36H60O2/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-25-35(37)38-30-28-32(3)23-20-22-31(2)26-27-34-33(4)24-21-29-36(34,5)6/h20,22-23,26-28H,7-19,21,24-25,29-30H2,1-6H3/b23-20+,27-26+,31-22+,32-28+", "VYGQUTWHTHXGQB-FFHKNEKCSA-N", "C36H60O2", "0.0", "524.8604", null, null, null, null, null, null, null, null, null, null, "17616", null, "HMDB03648", null, "10769148 | 10819989 | 12230550 | 15550674 | 15834126 | 15955102 | 16106050 | 16214399 | 16787387 | 17158102 | 17603008 | 20628054 | 25112876 | 9162045 | 9920938" ], [ "315", "SLM:000000612", null, "tetracosenoyl-CoA", null, null, "SLM:000390051 | SLM:000782334", null, null, "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O", null, null, "C45H76N7O17P3S", "-4.0", "1112.108", null, null, null, null, null, null, null, null, null, null, "74146", null, null, null, "18541923 | 20110363 | 20937905" ], [ "317", "SLM:000000614", null, "hexacosenoyl-CoA", null, null, "SLM:000390051 | SLM:000782334", null, null, "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O", null, null, "C47H80N7O17P3S", "-4.0", "1140.161", null, null, null, null, null, null, null, null, null, null, "74161", null, null, null, "18165233" ], [ "319", "SLM:000000621", null, "2-hydroxy-tetracosenoyl-CoA", null, null, "SLM:000390051 | SLM:000782334", null, null, "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C(O)[*]", null, null, "C45H76N7O18P3S", "-4.0", "1128.10952", null, null, null, null, null, null, null, null, null, null, "74215", null, null, null, "18541923" ], [ "512", "SLM:000000835", "Class", "Ceramide phosphomannosylinositol", "MIPC", "Mannosylinositol-1-phosphoceramide", "SLM:000000834 | SLM:000399815", null, null, "OC[C@H]1OC(O[C@@H]2[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)[C@H]2OP([O-])(=O)OC[C@H](NC([*])=O)[C@H](O)[*])[C@@H](O)[C@@H](O)[C@@H]1O", "InChI=none", null, "C16H27NO16PR2", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "64997", null, null, null, "10931938 | 11006294 | 20727985 | 22322963" ], [ "513", "SLM:000000836", "Class", "Ins-1-P-6-Man-1-2-Ins-1-P-Cer", "M(IP)2C", "Inositol phosphomannosylinositol-1-phosphoceramide | mannosyl diphosphorylinositol ceramide", "SLM:000000834 | SLM:000399815", null, null, "O[C@H]([*])[C@H](COP([O-])(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1OC1O[C@H](COP([O-])(=O)O[C@H]2[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@@H]1O)NC([*])=O", "InChI=none", null, "C22H37NO24P2R2", "-2.0", null, null, null, null, null, null, null, null, null, null, null, "74997", null, null, null, "10931938 | 20727985 | 22322963" ], [ "550", "SLM:000000880", "Class", "Lactosyl ceramide (d18:1(4E))", "LacCer(d18:1(4E))", "N-acyl-beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1)-sphing-4-enine", "SLM:000399708 | SLM:000501064", null, null, "CCCCCCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)NC([*])=O", "InChI=none", null, "C31H56NO13R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "17950", null, null, "MNXM527858", "10092602 | 10320813 | 10405317 | 10748143 | 10838196 | 10854427 | 10854428 | 11283017 | 11384981 | 12629211 | 15847605 | 16934889 | 21057870 | 21675735 | 23801329 | 30114188 | 3140234 | 8804427 | 8830034 | 9593693 | 9822625 | 9875239" ], [ "569", "SLM:000000926", "Class", "Galactosyl ceramide (d18:1(4E))", "GalCer(d18:1(4E))", "Galactosyl ceramide(d18:1(4E)) | N-acyl-1-O-beta-D-galactosyl-sphing-4-enine", "SLM:000389698 | SLM:000399707", null, null, "C(=C/CCCCCCCCCCCCC)[C@@H](O)[C@@H](NC(=O)*)CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O", null, null, "C25H46NO8R", "0.0", "488.636", null, null, null, null, null, null, null, null, null, null, "18390", null, null, "MNXM521765", "16934889 | 23532839 | 24294900 | 8399327 | 8713090 | 8830034" ], [ "610", "SLM:000001000", "Class", "Sphingomyelin", "SM", "Ceramide phosphocholine", "SLM:000000834 | SLM:000399815", null, null, "C[N+](C)(C)CCOP([O-])(=O)OC[C@H](NC([*])=O)[C@H](O)[*]", "InChI=none", null, null, "0.0", null, null, null, null, null, null, null, null, null, null, null, "64583", null, null, "MNXM354", "14741383 | 16702602 | 7654206" ], [ "611", "SLM:000001005", "Class", "Sulfogalactosyl ceramide (d18:1(4E))", "SulfoGalCer(d18:1(4E))", "N-acyl-1-O-beta-D-(3-O-sulfo)-galactosyl-sphing-4-enine", "SLM:000399709 | SLM:000501351", null, null, "CCCCCCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OS([O-])(=O)=O)[C@H]1O)NC([*])=O", "InChI=none", null, "C25H45NO11SR", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "75956", null, null, "MNXM683216", "24294900 | 8830034" ], [ "644", "SLM:000001051", null, "2-methylacetoacetyl-CoA", null, null, "SLM:000000726 | SLM:000782258", null, null, "CC(C(C)=O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12", "InChI=1S/C26H42N7O18P3S/c1-13(14(2)34)25(39)55-8-7-28-16(35)5-6-29-23(38)20(37)26(3,4)10-48-54(45,46)51-53(43,44)47-9-15-19(50-52(40,41)42)18(36)24(49-15)33-12-32-17-21(27)30-11-31-22(17)33/h11-13,15,18-20,24,36-37H,5-10H2,1-4H3,(H,28,35)(H,29,38)(H,43,44)(H,45,46)(H2,27,30,31)(H2,40,41,42)/p-4/t13?,15-,18-,19-,20+,24-/m1/s1", "NHNODHRSCRALBF-NQNBQJKNSA-J", "C26H38N7O18P3S", "-4.0", "861.602", null, null, null, null, null, null, null, null, null, null, "57335", null, null, null, "17371050 | 19706438" ], [ "387295", "SLM:000389357", null, "nonanoyl-CoA", null, null, "SLM:000390052 | SLM:000782335", null, null, "CCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12", "InChI=1S/C30H52N7O17P3S/c1-4-5-6-7-8-9-10-21(39)58-14-13-32-20(38)11-12-33-28(42)25(41)30(2,3)16-51-57(48,49)54-56(46,47)50-15-19-24(53-55(43,44)45)23(40)29(52-19)37-18-36-22-26(31)34-17-35-27(22)37/h17-19,23-25,29,40-41H,4-16H2,1-3H3,(H,32,38)(H,33,42)(H,46,47)(H,48,49)(H2,31,34,35)(H2,43,44,45)/p-4/t19-,23-,24-,25+,29-/m1/s1", "WLDUTYVSAGSKIV-FUEUKBNZSA-J", "C30H48N7O17P3S", "-4.0", "903.725", null, null, null, null, null, null, null, null, null, null, "76291", null, null, null, "16020546 | 18267944" ], [ "387339", "SLM:000389419", "Isomeric subspecies", "All-trans-retinyl (9Z)-octadecenoate", null, "all-trans-retinyl oleate", "SLM:000000982 | SLM:000508854", null, null, "CCCCCCCCC=C/CCCCCCCC(=O)OCC=C(C)C=CC=C(C)C=CC1=C(C)CCCC1(C)C", "InChI=1S/C38H62O2/c1-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-27-37(39)40-32-30-34(3)25-22-24-33(2)28-29-36-35(4)26-23-31-38(36,5)6/h14-15,22,24-25,28-30H,7-13,16-21,23,26-27,31-32H2,1-6H3/b15-14-,25-22+,29-28+,33-24+,34-30+", 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Lipid IDLevelNameAbbreviation*Synonyms*Lipid class*ParentComponents*SMILES (pH7.3)InChI (pH7.3)...Exact m/z of [M+Li]+Exact m/z of [M+NH4]+Exact m/z of [M-H]-Exact m/z of [M+Cl]-Exact m/z of [M+OAc]-CHEBILIPID MAPSHMDBMetaNetXPMID
142SLM:000000392ClassCeramide phosphoinositolIPCInositol-1-phosphoceramideSLM:000000834 | SLM:000399815NaNNaNO[C@H]([*])[C@H](COP([O-])(=O)O[C@H]1[C@H](O)[...InChI=none...NaNNaNNaNNaNNaN64916NaNNaNNaN10888667 | 20727985
234SLM:000000509Isomeric subspeciesAll-trans-retinyl hexadecanoateNaNall-trans-retinyl palmitateSLM:000000982 | SLM:000508854NaNNaNCCCCCCCCCCCCCCCC(=O)OCC=C(C)C=CC=C(C)C=CC1=C(C...InChI=1S/C36H60O2/c1-7-8-9-10-11-12-13-14-15-1......NaNNaNNaNNaNNaN17616NaNHMDB03648NaN10769148 | 10819989 | 12230550 | 15550674 | 15...
315SLM:000000612NaNtetracosenoyl-CoANaNNaNSLM:000390051 | SLM:000782334NaNNaNCC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](...NaN...NaNNaNNaNNaNNaN74146NaNNaNNaN18541923 | 20110363 | 20937905
317SLM:000000614NaNhexacosenoyl-CoANaNNaNSLM:000390051 | SLM:000782334NaNNaNCC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](...NaN...NaNNaNNaNNaNNaN74161NaNNaNNaN18165233
319SLM:000000621NaN2-hydroxy-tetracosenoyl-CoANaNNaNSLM:000390051 | SLM:000782334NaNNaNCC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](...NaN...NaNNaNNaNNaNNaN74215NaNNaNNaN18541923
..................................................................
755324SLM:000758294ClassGlobosideGloboGlobo-seriesSLM:000000834 | SLM:000399813NaNNaNNaNNaN...NaNNaNNaNNaNNaN61360NaNNaNNaNNaN
755325SLM:000758295ClassIsoglobosideIsogloboIsoglobo-seriesSLM:000000834 | SLM:000399813NaNNaNNaNNaN...NaNNaNNaNNaNNaN78257NaNNaNNaNNaN
779141SLM:000782221NaNResolvin ERvENaNSLM:000501332 | SLM:000508853NaNNaNNaNInChI=none...NaNNaNNaNNaNNaNNaNLMFA0314NaNNaNNaN
779142SLM:000782222NaNResolvin DRvDNaNSLM:000501331 | SLM:000508853NaNNaNNaNInChI=none...NaNNaNNaNNaNNaNNaNLMFA0403NaNNaNNaN
779157SLM:000782237NaNan N-(omega-(9Z,12Z-octadecadienoyloxy)-ultra-...NaNNaNSLM:000000413 | SLM:000782274NaNNaN[C@H]([C@@H](/C=C/CCCCCCCCCCCCC)O)(NC(=O)*COC(...NaN...NaNNaNNaNNaNNaN157662NaNNaNNaNNaN
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119 rows × 29 columns

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" ], "text/plain": [ " Lipid ID Level \\\n", "142 SLM:000000392 Class \n", "234 SLM:000000509 Isomeric subspecies \n", "315 SLM:000000612 NaN \n", "317 SLM:000000614 NaN \n", "319 SLM:000000621 NaN \n", "... ... ... \n", "755324 SLM:000758294 Class \n", "755325 SLM:000758295 Class \n", "779141 SLM:000782221 NaN \n", "779142 SLM:000782222 NaN \n", "779157 SLM:000782237 NaN \n", "\n", " Name Abbreviation* \\\n", "142 Ceramide phosphoinositol IPC \n", "234 All-trans-retinyl hexadecanoate NaN \n", "315 tetracosenoyl-CoA NaN \n", "317 hexacosenoyl-CoA NaN \n", "319 2-hydroxy-tetracosenoyl-CoA NaN \n", "... ... ... \n", "755324 Globoside Globo \n", "755325 Isogloboside Isoglobo \n", "779141 Resolvin E RvE \n", "779142 Resolvin D RvD \n", "779157 an N-(omega-(9Z,12Z-octadecadienoyloxy)-ultra-... NaN \n", "\n", " Synonyms* Lipid class* Parent \\\n", "142 Inositol-1-phosphoceramide SLM:000000834 | SLM:000399815 NaN \n", "234 all-trans-retinyl palmitate SLM:000000982 | SLM:000508854 NaN \n", "315 NaN SLM:000390051 | SLM:000782334 NaN \n", "317 NaN SLM:000390051 | SLM:000782334 NaN \n", "319 NaN SLM:000390051 | SLM:000782334 NaN \n", "... ... ... ... \n", "755324 Globo-series SLM:000000834 | SLM:000399813 NaN \n", "755325 Isoglobo-series SLM:000000834 | SLM:000399813 NaN \n", "779141 NaN SLM:000501332 | SLM:000508853 NaN \n", "779142 NaN SLM:000501331 | SLM:000508853 NaN \n", "779157 NaN SLM:000000413 | SLM:000782274 NaN \n", "\n", " Components* SMILES (pH7.3) \\\n", "142 NaN O[C@H]([*])[C@H](COP([O-])(=O)O[C@H]1[C@H](O)[... \n", "234 NaN CCCCCCCCCCCCCCCC(=O)OCC=C(C)C=CC=C(C)C=CC1=C(C... \n", "315 NaN CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](... \n", "317 NaN CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](... \n", "319 NaN CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H](... \n", "... ... ... \n", "755324 NaN NaN \n", "755325 NaN NaN \n", "779141 NaN NaN \n", "779142 NaN NaN \n", "779157 NaN [C@H]([C@@H](/C=C/CCCCCCCCCCCCC)O)(NC(=O)*COC(... \n", "\n", " InChI (pH7.3) ... \\\n", "142 InChI=none ... \n", "234 InChI=1S/C36H60O2/c1-7-8-9-10-11-12-13-14-15-1... ... \n", "315 NaN ... \n", "317 NaN ... \n", "319 NaN ... \n", "... ... ... \n", "755324 NaN ... \n", "755325 NaN ... \n", "779141 InChI=none ... \n", "779142 InChI=none ... \n", "779157 NaN ... \n", "\n", " Exact m/z of [M+Li]+ Exact m/z of [M+NH4]+ Exact m/z of [M-H]- \\\n", "142 NaN NaN NaN \n", "234 NaN NaN NaN \n", "315 NaN NaN NaN \n", "317 NaN NaN NaN \n", "319 NaN NaN NaN \n", "... ... ... ... \n", "755324 NaN NaN NaN \n", "755325 NaN NaN NaN \n", "779141 NaN NaN NaN \n", "779142 NaN NaN NaN \n", "779157 NaN NaN NaN \n", "\n", " Exact m/z of [M+Cl]- Exact m/z of [M+OAc]- CHEBI LIPID MAPS \\\n", "142 NaN NaN 64916 NaN \n", "234 NaN NaN 17616 NaN \n", "315 NaN NaN 74146 NaN \n", "317 NaN NaN 74161 NaN \n", "319 NaN NaN 74215 NaN \n", "... ... ... ... ... \n", "755324 NaN NaN 61360 NaN \n", "755325 NaN NaN 78257 NaN \n", "779141 NaN NaN NaN LMFA0314 \n", "779142 NaN NaN NaN LMFA0403 \n", "779157 NaN NaN 157662 NaN \n", "\n", " HMDB MetaNetX PMID \n", "142 NaN NaN 10888667 | 20727985 \n", "234 HMDB03648 NaN 10769148 | 10819989 | 12230550 | 15550674 | 15... \n", "315 NaN NaN 18541923 | 20110363 | 20937905 \n", "317 NaN NaN 18165233 \n", "319 NaN NaN 18541923 \n", "... ... ... ... \n", "755324 NaN NaN NaN \n", "755325 NaN NaN NaN \n", "779141 NaN NaN NaN \n", "779142 NaN NaN NaN \n", "779157 NaN NaN NaN \n", "\n", "[119 rows x 29 columns]" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "Checking split characters (|) in Parent\n", "No rows found\n", "\n", "Checking split characters (|) in Components*\n", "No rows found\n", "\n", "Checking split characters (|) in SMILES (pH7.3)\n", "No rows found\n", "\n", "Checking split characters (|) in InChI (pH7.3)\n", "No rows found\n", "\n", "Checking split characters (|) in InChI key (pH7.3)\n", "No rows found\n", "\n", "Checking split characters (|) in Formula (pH7.3)\n", "No rows found\n", "\n", "Checking split characters (|) in Charge (pH7.3)\n", "Not a string column\n", "\n", "Checking split characters (|) in Mass (pH7.3)\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact Mass (neutral form)\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M.]+\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M+H]+\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M+K]+ \n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M+Na]+\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M+Li]+\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M+NH4]+\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M-H]-\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M+Cl]-\n", "Not a string column\n", "\n", "Checking split characters (|) in Exact m/z of [M+OAc]- \n", "Not a string column\n", "\n", "Checking split characters (|) in CHEBI\n", "Found 3 rows with split characters\n" ] }, { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "unknown" }, { "name": "Name", "rawType": "object", "type": "string" }, { "name": "Abbreviation*", "rawType": "object", "type": "unknown" }, { "name": "Synonyms*", "rawType": "object", "type": "unknown" }, { "name": "Lipid class*", "rawType": "object", "type": "string" }, { "name": "Parent", "rawType": "object", "type": "unknown" }, { "name": "Components*", "rawType": "object", "type": "unknown" }, { "name": "SMILES (pH7.3)", "rawType": "object", "type": "string" }, { "name": "InChI (pH7.3)", "rawType": "object", "type": "string" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "string" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Cl]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+OAc]- ", "rawType": "float64", "type": "float" }, { "name": "CHEBI", "rawType": "object", "type": "string" }, { "name": "LIPID MAPS", "rawType": "object", "type": "unknown" }, { "name": "HMDB", "rawType": "object", "type": "unknown" }, { "name": "MetaNetX", "rawType": "object", "type": "unknown" }, { "name": "PMID", "rawType": "object", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "3dc9cd79-f471-4001-a9ad-fb5f30064cae", "rows": [ [ "465", "SLM:000000784", "Isomeric subspecies", "1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate", "PA(18:1(9Z)/18:1(9Z))", "Phosphatidate (18:1(9Z)/18:1(9Z))", "SLM:000000329", "SLM:000082169", "SLM:000000418 (sn1 or sn2)", "CCCCCCCC\\C=C/CCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCC\\C=C/CCCCCCCC", "InChI=1S/C39H73O8P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-38(40)45-35-37(36-46-48(42,43)44)47-39(41)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h17-20,37H,3-16,21-36H2,1-2H3,(H2,42,43,44)/p-2/b19-17-,20-18-/t37-/m1/s1", "InChIKey=MHUWZNTUIIFHAS-DSSVUWSHSA-L", "C39H71O8P", "-2.0", "698.951111", "700.504333", "700.503784", "701.511597", "739.467468", "723.49353", "707.519775", "718.538147", "699.497009", "735.473694", "759.518188", "74546 | 82922", "LMGP10010962", "HMDB07865", "MNXM51075", "11309392 | 14634025 | 14665624 | 15164764 | 15252046 | 15544348 | 15629135 | 15760304 | 15939762 | 16527816 | 16620771 | 17535816 | 17652094 | 17655883 | 17726007 | 18004883 | 18458076 | 18606822 | 19318427 | 19744926 | 19801371 | 20016004 | 20231281 | 20332534 | 20363836 | 21173190 | 21550973 | 21801852 | 21873652 | 21878620 | 22108654 | 22560221 | 22627129 | 22825852 | 22905194 | 22922100 | 23335564 | 23949095 | 25375833 | 25423491 | 26417903 | 8034597 | 8626588 | 9099683 | 9159104 | 9305923 | 9461603 | 9607309 | 9830018" ], [ "387185", "SLM:000389154", null, "(14Z,17Z,20Z,23Z,26Z)-dotriacontapentaenoate", null, "Fatty acid 32:5(14Z,17Z,20Z,23Z,26Z)", "SLM:000389801", null, null, "CCCCC\\C=C/C\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCCCCCCCCCCC([O-])=O", "InChI=1S/C32H54O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27-28-29-30-31-32(33)34/h6-7,9-10,12-13,15-16,18-19H,2-5,8,11,14,17,20-31H2,1H3,(H,33,34)/p-1/b7-6-,10-9-,13-12-,16-15-,19-18-", "InChIKey=SOJWNXGBEWFLQL-WMPRHZDHSA-M", "C32H53O2", "-1.0", "469.7626", "470.412381", "470.411832", "471.419657", "509.375539", "493.401602", "477.427836", "488.446207", "469.405105", "505.381782", "529.426234", "82731 | CHEBI:82731", "LMFA01030848", null, null, null ], [ "595221", "SLM:000598072", null, "all-trans-retinol--[retinol-binding protein]", null, null, "SLM:000000982", null, null, "[*][C@H](N-*)C(-*)=O", "InChI=none", null, "C2H2NOR", "0.0", "56.0434", null, null, null, null, null, null, null, null, null, null, "17336 | 83228", null, null, null, "20628054 | 28758396" ] ], "shape": { "columns": 29, "rows": 3 } }, "text/html": [ "
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Lipid IDLevelNameAbbreviation*Synonyms*Lipid class*ParentComponents*SMILES (pH7.3)InChI (pH7.3)...Exact m/z of [M+Li]+Exact m/z of [M+NH4]+Exact m/z of [M-H]-Exact m/z of [M+Cl]-Exact m/z of [M+OAc]-CHEBILIPID MAPSHMDBMetaNetXPMID
465SLM:000000784Isomeric subspecies1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphatePA(18:1(9Z)/18:1(9Z))Phosphatidate (18:1(9Z)/18:1(9Z))SLM:000000329SLM:000082169SLM:000000418 (sn1 or sn2)CCCCCCCC\\C=C/CCCCCCCC(=O)OC[C@H](COP([O-])([O-...InChI=1S/C39H73O8P/c1-3-5-7-9-11-13-15-17-19-2......707.519775718.538147699.497009735.473694759.51818874546 | 82922LMGP10010962HMDB07865MNXM5107511309392 | 14634025 | 14665624 | 15164764 | 15...
387185SLM:000389154NaN(14Z,17Z,20Z,23Z,26Z)-dotriacontapentaenoateNaNFatty acid 32:5(14Z,17Z,20Z,23Z,26Z)SLM:000389801NaNNaNCCCCC\\C=C/C\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCCCCCCCCCC...InChI=1S/C32H54O2/c1-2-3-4-5-6-7-8-9-10-11-12-......477.427836488.446207469.405105505.381782529.42623482731 | CHEBI:82731LMFA01030848NaNNaNNaN
595221SLM:000598072NaNall-trans-retinol--[retinol-binding protein]NaNNaNSLM:000000982NaNNaN[*][C@H](N-*)C(-*)=OInChI=none...NaNNaNNaNNaNNaN17336 | 83228NaNNaNNaN20628054 | 28758396
\n", "

3 rows × 29 columns

\n", "
" ], "text/plain": [ " Lipid ID Level \\\n", "465 SLM:000000784 Isomeric subspecies \n", "387185 SLM:000389154 NaN \n", "595221 SLM:000598072 NaN \n", "\n", " Name \\\n", "465 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate \n", "387185 (14Z,17Z,20Z,23Z,26Z)-dotriacontapentaenoate \n", "595221 all-trans-retinol--[retinol-binding protein] \n", "\n", " Abbreviation* Synonyms* \\\n", "465 PA(18:1(9Z)/18:1(9Z)) Phosphatidate (18:1(9Z)/18:1(9Z)) \n", "387185 NaN Fatty acid 32:5(14Z,17Z,20Z,23Z,26Z) \n", "595221 NaN NaN \n", "\n", " Lipid class* Parent Components* \\\n", "465 SLM:000000329 SLM:000082169 SLM:000000418 (sn1 or sn2) \n", "387185 SLM:000389801 NaN NaN \n", "595221 SLM:000000982 NaN NaN \n", "\n", " SMILES (pH7.3) \\\n", "465 CCCCCCCC\\C=C/CCCCCCCC(=O)OC[C@H](COP([O-])([O-... \n", "387185 CCCCC\\C=C/C\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCCCCCCCCCC... \n", "595221 [*][C@H](N-*)C(-*)=O \n", "\n", " InChI (pH7.3) ... \\\n", "465 InChI=1S/C39H73O8P/c1-3-5-7-9-11-13-15-17-19-2... ... \n", "387185 InChI=1S/C32H54O2/c1-2-3-4-5-6-7-8-9-10-11-12-... ... \n", "595221 InChI=none ... \n", "\n", " Exact m/z of [M+Li]+ Exact m/z of [M+NH4]+ Exact m/z of [M-H]- \\\n", "465 707.519775 718.538147 699.497009 \n", "387185 477.427836 488.446207 469.405105 \n", "595221 NaN NaN NaN \n", "\n", " Exact m/z of [M+Cl]- Exact m/z of [M+OAc]- CHEBI \\\n", "465 735.473694 759.518188 74546 | 82922 \n", "387185 505.381782 529.426234 82731 | CHEBI:82731 \n", "595221 NaN NaN 17336 | 83228 \n", "\n", " LIPID MAPS HMDB MetaNetX \\\n", "465 LMGP10010962 HMDB07865 MNXM51075 \n", "387185 LMFA01030848 NaN NaN \n", "595221 NaN NaN NaN \n", "\n", " PMID \n", "465 11309392 | 14634025 | 14665624 | 15164764 | 15... \n", "387185 NaN \n", "595221 20628054 | 28758396 \n", "\n", "[3 rows x 29 columns]" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "Checking split characters (|) in LIPID MAPS\n", "No rows found\n", "\n", "Checking split characters (|) in HMDB\n", "No rows found\n", "\n", "Checking split characters (|) in MetaNetX\n", "No rows found\n", "\n", "Checking split characters (|) in PMID\n", "Found 1318 rows with split characters\n" ] }, { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "unknown" }, { "name": "Name", "rawType": "object", "type": "string" }, { "name": "Abbreviation*", "rawType": "object", "type": "unknown" }, { "name": "Synonyms*", "rawType": "object", "type": "unknown" }, { "name": "Lipid class*", "rawType": "object", "type": "string" }, { "name": "Parent", "rawType": "object", "type": "unknown" }, { "name": "Components*", "rawType": "object", "type": "unknown" }, { "name": "SMILES (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "unknown" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Cl]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+OAc]- ", "rawType": "float64", "type": "float" }, { "name": "CHEBI", "rawType": "object", "type": "unknown" }, { "name": "LIPID MAPS", "rawType": "object", "type": "unknown" }, { "name": "HMDB", "rawType": "object", "type": "unknown" }, { "name": "MetaNetX", "rawType": "object", "type": "unknown" }, { "name": "PMID", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "ac1397bf-7eaf-4086-ad71-cb43161b3c27", "rows": [ [ "0", "SLM:000000002", "Class", "Ceramide (iso-d17:1(4E))", "Cer(iso-d17:1(4E))", "N-acyl-15-methylhexadecasphing-4-enine", "SLM:000399814", null, null, "CC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO)NC([*])=O", "InChI=none", null, "C18H34NO3R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "70846", null, null, "MNXM97012", " | 11443131 | 14685263 | 18390550 | 21325339 | 21926990 | 9603947" ], [ "3", "SLM:000000007", "Class", "Sphingomyelin (iso-d17:1(4E))", "SM(iso-d17:1(4E))", "N-acyl-15-methylhexadecasphing-4-enine-1-phosphocholine", "SLM:000001000", null, null, "CC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](COP([O-])(=O)OCC[N+](C)(C)C)NC([*])=O", "InChI=none", null, "C23H46N2O6PR", "0.0", null, null, null, null, null, null, null, null, null, null, null, "70775", null, null, "MNXM97113", "14685263 | 21926990 | 9603947" ], [ "4", "SLM:000000035", "Isomeric subspecies", "sphinganine", null, null, "SLM:000390097", null, null, "CCCCCCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])CO", "InChI=1S/C18H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)17(19)16-20/h17-18,20-21H,2-16,19H2,1H3/p+1/t17-,18+/m0/s1", "InChIKey=OTKJDMGTUTTYMP-ZWKOTPCHSA-O", "C18H40NO2", "1.0", "302.5157", "301.29808", "301.297531", "302.305356", "340.261238", "324.287301", "308.313535", "319.331905", "300.290803", "336.267481", "360.311932", "57817", "LMSP01020001", "HMDB00269", "MNXM302", "10652340 | 10702247 | 10751414 | 10802064 | 10900202 | 11694577 | 11923095 | 12034738 | 12105227 | 12411432 | 12764132 | 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29253589 | 8557688 | 9407135 | 9462830 | 9880566" ], [ "11", "SLM:000000101", "Class", "1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol-3'-phosphate)", "PA", "1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero-3'-phosphate) | Phosphatidylglycerophosphate", "SLM:000477285", null, null, "O[C@@H](COP([O-])([O-])=O)COP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C8H11O13P2R2", "-3.0", null, null, null, null, null, null, null, null, null, null, null, "60110", null, null, "MNXM871", "20485265 | 9880566" ], [ "12", "SLM:000000102", "Class", "Cardiolipin", "CL", null, "SLM:000508862", null, null, "OC(COP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O)COP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C13H16O17P2R4", "-2.0", null, null, null, null, null, null, null, null, null, null, null, "62237", null, null, null, "14573790 | 16547353 | 19244244 | 20485265 | 23150663 | 9462830" ], [ "13", "SLM:000000119", "Isomeric subspecies", "sphinganine 1-phosphate", null, "S1DHP", 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18772128 | 19000777 | 19014349 | 19454763 | 19506037 | 20485265 | 20727985 | 24097981 | 2445736 | 24706822 | 8898203 | 9132017 | 9575223" ], [ "48", "SLM:000000240", "Class", "1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol)", "PG", "Phosphatidylglycerol", "SLM:000055215", null, null, "OC[C@H](O)COP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C8H12O10PR2", "-1.0", null, null, null, null, null, null, null, null, null, null, null, "64716", null, null, "MNXM101192", "16547353 | 18434318 | 19075029 | 20485265 | 9132017 | 9462830" ], [ "50", "SLM:000000249", "Class", "Fatty acyl-CoAs", null, null, "SLM:000390054", null, null, "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O", "InChI=none", "-", "C22H31N7O17P3SR", "-4.0", null, null, null, null, null, null, null, null, null, null, null, "58342", null, null, "MNXM44", "10672016 | 11694577 | 12851411 | 15588229 | 17890783 | 18772128 | 19075029 | 19318427 | 19372430" ], [ "55", "SLM:000000261", "Class", "1,2-diacyl-sn-glycero-3-phosphocholine", "PC", "Phosphatidylcholine", "SLM:000055211", null, null, "C[N+](C)(C)CCOP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C10H18NO8PR2", "0.0", null, null, null, null, null, null, null, null, null, null, null, "57643", null, null, "MNXM110", "10848624 | 12055623 | 14685263 | 14976195 | 15044461 | 15588229 | 16478722 | 17237796 | 17401110 | 17449912 | 17982138 | 18037386 | 1847919 | 18629440 | 19000777 | 19014349 | 19454763 | 20332109 | 20727985 | 20736081 | 21614002 | 22822086 | 23532839 | 24097981 | 2445736 | 7654206 | 7654777 | 7912658 | 8530346 | 8576189 | 8618862 | 8757862 | 8898203 | 9132017" ], [ "56", "SLM:000000262", "Class", "1,2-diacyl-sn-glycerol", "1,2-sn-DAG | DAG | DG", "Diacylglycerol", "SLM:000000423", null, null, "OC[C@@H](COC([*])=O)OC([*])=O", "InChI=none", null, "C5H6O5R2", "0.0", null, null, null, null, null, null, null, null, null, null, null, "17815", null, null, "MNXM59", "10336610 | 10685032 | 10888667 | 10931938 | 11022048 | 12181444 | 14685263 | 14976195 | 15140260 | 15509571 | 15702972 | 15790568 | 15817490 | 15899900 | 15939762 | 16000311 | 1644792 | 16467296 | 16689792 | 17158099 | 17449912 | 17971454 | 17982138 | 18037386 | 18184806 | 18361507 | 18434318 | 1847919 | 19454763 | 19506037 | 20736081 | 20798281 | 21187285 | 22322963 | 23000145 | 7531435 | 7890667 | 8395015 | 8407970 | 8454637 | 8550586 | 8567632 | 8663293 | 8757862 | 9099673 | 9132017 | 9188725 | 9368028 | 9603941 | 9915823" ], [ "60", "SLM:000000272", "Class", "Glucosyl ceramide (iso-d17:1(4E))", "GlcCer(iso-d17:1(4E))", "N-acyl-1-O-beta-D-glucosyl-15-methylhexadecasphing-4-enine", "SLM:000399707", null, null, "CC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)NC([*])=O", "InChI=none", null, "C24H44NO8R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "70815", null, null, "MNXM97111", " | 11443131 | 21325339" ], [ "61", "SLM:000000274", "Isomeric subspecies", "Malonyl-CoA", null, null, "SLM:000508836", null, null, "CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC([O-])=O", "InChI=1S/C24H38N7O19P3S/c1-24(2,19(37)22(38)27-4-3-13(32)26-5-6-54-15(35)7-14(33)34)9-47-53(44,45)50-52(42,43)46-8-12-18(49-51(39,40)41)17(36)23(48-12)31-11-30-16-20(25)28-10-29-21(16)31/h10-12,17-19,23,36-37H,3-9H2,1-2H3,(H,26,32)(H,27,38)(H,33,34)(H,42,43)(H,44,45)(H2,25,28,29)(H2,39,40,41)/p-5/t12-,17-,18-,19+,23-/m1/s1", "LTYOQGRJFJAKNA-DVVLENMVSA-I", "C24H33N7O19P3S", "-5.0", "848.541", null, null, null, null, null, null, null, null, null, null, "57384", null, null, null, "10455107 | 10829069 | 10850979 | 10970790 | 11373295 | 11567032 | 11673457 | 11734209 | 11972048 | 12023885 | 12087109 | 12371743 | 12586704 | 12882974 | 12941968 | 1314802 | 15286723 | 15340492 | 15984864 | 16141203 | 16354663 | 17114269 | 17719544 | 17906635 | 18728184 | 19236960 | 19575253 | 20228221 | 20457939 | 20937905 | 21106902 | 21846720 | 21959040 | 22158834 | 22199362 | 22216341 | 23479632 | 23482565 | 23597093 | 23615910 | 23689133 | 23873268 | 24184513 | 24569140 | 25003994 | 7592873 | 8702485 | 8910376 | 8962082 | 9356448" ], [ "71", "SLM:000000285", "Class", "Ceramide (d18:0)", "Cer(d18:0)", "N-acylsphinganine", "SLM:000399814", null, null, "CCCCCCCCCCCCCCC[C@@H](O)[C@H](CO)NC([*])=O", "InChI=none", null, "C19H38NO3R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "31488", null, null, "MNXM616", "11694577 | 11937514 | 12633877 | 15063729 | 20139604 | 20207939 | 20727985 | 9368039 | 9556590" ], [ "72", "SLM:000000287", "Isomeric subspecies", "cholesterol", null, null, "SLM:000501263", null, null, "CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C", "InChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1", "InChIKey=HVYWMOMLDIMFJA-AXQHIUEBSA-N", "C27H46O", "0.0", "386.664", "386.354866", "386.354318", "387.362143", "425.318024", "409.344087", "393.370322", "404.388692", "385.34759", "421.324267", "445.368719", "16113", "LMST01010001", "HMDB00067", "MNXM103", "10329655 | 10377398 | 10802740 | 11013305 | 11015575 | 11067870 | 11230174 | 11294643 | 11514559 | 11519011 | 12077124 | 12145317 | 12591949 | 14636062 | 14640697 | 15314240 | 15550674 | 15716583 | 15746430 | 16563875 | 16702602 | 16867993 | 1718995 | 17408620 | 17552909 | 17630785 | 17651430 | 18403318 | 18495818 | 18772377 | 18782767 | 19563754 | 20332534 | 20625037 | 20674861 | 20843794 | 21257778 | 21411718 | 21525977 | 21576599 | 21602275 | 21632547 | 21636783 | 21671375 | 21749634 | 22178193 | 22891291 | 23337244 | 24211208 | 24576892 | 25637936 | 26724485 | 27509211 | 32433614 | 7560069 | 7892608 | 9020103 | 9162045 | 9465114 | 9633819 | 9634533 | 9660774 | 9756920 | 9852097 | 9857049" ], [ "73", "SLM:000000288", "Isomeric subspecies", "cholest-5-en-3-one", null, null, "SLM:000501263", null, null, "[H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C", "InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,22-25H,6-8,10-17H2,1-5H3/t19-,22+,23-,24+,25+,26+,27-/m1/s1", "InChIKey=GGCLNOIGPMGLDB-SEZUBBNRSA-N", "C27H44O", "0.0", "384.648", "384.339216", "384.338667", "385.346492", "423.302374", "407.328437", "391.354671", "402.373042", "383.33194", "419.308617", "443.353069", "63906", "LMST01010248", null, "MNXM2990", "17630785 | 17651430 | 18495818 | 21257778" ], [ "74", "SLM:000000290", "Isomeric subspecies", "cholest-4-en-3-one", null, null, "SLM:000501263", null, null, "[H][C@@]1(CC[C@@]2([H])[C@]3([H])CCC4=CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C", "InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h17-19,22-25H,6-16H2,1-5H3/t19-,22+,23-,24+,25+,26+,27-/m1/s1", "InChIKey=NYOXRYYXRWJDKP-SEZUBBNRSA-N", "C27H44O", "0.0", "384.648", "384.339216", "384.338667", "385.346492", "423.302374", "407.328437", "391.354671", "402.373042", "383.33194", "419.308617", "443.353069", "16175", "LMST01010015", "HMDB00921", "MNXM973", "17630785 | 18495818 | 20843794 | 21255593 | 21257778" ], [ "75", "SLM:000000294", "Isomeric subspecies", "N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine", "NAE (20:4(5Z,8Z,11Z,14Z))", "(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamide | anandamide", "SLM:000000378", null, null, "CCCCC\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCC(=O)NCCO", "InChI=1S/C22H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-22(25)23-20-21-24/h6-7,9-10,12-13,15-16,24H,2-5,8,11,14,17-21H2,1H3,(H,23,25)/b7-6-,10-9-,13-12-,16-15-", "InChIKey=LGEQQWMQCRIYKG-DOFZRALJSA-N", "C22H37NO2", "0.0", "347.5347", "347.282429", "347.281881", "348.289706", "386.245588", "370.271651", "354.297885", "365.316255", "346.275153", "382.251831", "406.296282", "2700", null, "HMDB04080", null, "14634025 | 16527816 | 16938887 | 17015445 | 17626977 | 17649977 | 17655883 | 18227059 | 18549450 | 18698000 | 20702771 | 21289075 | 21562563 | 25423491 | 25596343 | 27571266 | 27637550 | 32271712" ], [ "76", "SLM:000000296", "Isomeric subspecies", "(5Z,8Z,11Z,14Z)-eicosatetraenoate", null, "20:4(5Z,8Z,11Z,14Z) | Arachidonate", "SLM:000389801", null, null, "CCCCC\\C=C/C\\C=C/C\\C=C/C\\C=C/CCCC([O-])=O", "InChI=1S/C20H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h6-7,9-10,12-13,15-16H,2-5,8,11,14,17-19H2,1H3,(H,21,22)/p-1/b7-6-,10-9-,13-12-,16-15-", "InChIKey=YZXBAPSDXZZRGB-DOFZRALJSA-M", "C20H31O2", "-1.0", "303.4595", "304.24023", "304.239682", "305.247507", "343.203389", "327.229451", "311.255686", "322.274056", "303.232954", "339.209632", "363.254083", "32395", "LMFA01030001", "HMDB01043", "MNXM135", "10085124 | 10320809 | 10358058 | 10542053 | 10559269 | 10620324 | 10660572 | 10681567 | 10744668 | 10791960 | 10854433 | 10908295 | 10965849 | 11034610 | 11162607 | 11180564 | 11192938 | 11256953 | 11673457 | 11927584 | 12244105 | 12522102 | 12672805 | 12704195 | 14634044 | 14636062 | 14660610 | 14709560 | 15007068 | 15041462 | 15084647 | 15364545 | 15558016 | 15695510 | 15699031 | 15908428 | 16112079 | 16143298 | 16617059 | 16762313 | 16820285 | 16940157 | 17015445 | 17112342 | 17158102 | 17293613 | 17341693 | 17472963 | 17493578 | 17649977 | 18171998 | 18258213 | 18451993 | 18577768 | 18614531 | 19029917 | 19047760 | 19169353 | 1944593 | 19453107 | 19615464 | 19965576 | 20068046 | 20079333 | 20972997 | 21049984 | 21242590 | 21454566 | 21562563 | 21880860 | 22586271 | 22923616 | 22942274 | 22969151 | 22984144 | 23533611 | 23936004 | 24282679 | 24368842 | 24563460 | 24628888 | 24893149 | 24958911 | 25290914 | 25580854 | 26989199 | 27374330 | 28209804 | 30237167 | 31664810 | 32271712 | 7574697 | 7592599 | 7794891 | 7883976 | 7947975 | 8188678 | 8300559 | 8334154 | 8615788 | 8631361 | 8631948 | 9048568 | 9143331 | 9177185 | 9302294 | 9305900 | 9425121 | 9435160 | 9618483 | 9721182 | 9837935 | 9866708" ], [ "77", "SLM:000000297", "Isomeric subspecies", "acetyl-CoA", null, null, "SLM:000390052", null, null, "CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12", "InChI=1S/C23H38N7O17P3S/c1-12(31)51-7-6-25-14(32)4-5-26-21(35)18(34)23(2,3)9-44-50(41,42)47-49(39,40)43-8-13-17(46-48(36,37)38)16(33)22(45-13)30-11-29-15-19(24)27-10-28-20(15)30/h10-11,13,16-18,22,33-34H,4-9H2,1-3H3,(H,25,32)(H,26,35)(H,39,40)(H,41,42)(H2,24,27,28)(H2,36,37,38)/p-4/t13-,16-,17-,18+,22-/m1/s1", "InChIKey=ZSLZBFCDCINBPY-ZSJPKINUSA-J", "C23H34N7O17P3S", "-4.0", "805.539", "809.125773", "809.125225", "810.13305", "848.088931", "832.114994", "816.141229", "827.159599", "808.118497", "844.095174", "868.139626", "57288", "LMFA07050029", "HMDB01206", "MNXM21", "10064897 | 10455107 | 10629181 | 10843999 | 10944470 | 11673457 | 11785945 | 12815048 | 15099582 | 1550553 | 16354663 | 16476568 | 16951743 | 17114269 | 17182612 | 17236799 | 17371050 | 18285344 | 19236960 | 19286649 | 19470242 | 20457939 | 22847177 | 22865860 | 23482565 | 23485643 | 23614353 | 23751782 | 23932781 | 24444601 | 25002576 | 25450640 | 25478839 | 25482540 | 29056341 | 7592873 | 7911016 | 7913309 | 7958339 | 8027038 | 8063752 | 8163672 | 8651282 | 8910376 | 8962082 | 9325339 | 9356448" ], [ "78", "SLM:000000298", "Isomeric subspecies", "acetoacetyl-CoA", null, null, "SLM:000000726", null, null, "CC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12", "InChI=1S/C25H40N7O18P3S/c1-13(33)8-16(35)54-7-6-27-15(34)4-5-28-23(38)20(37)25(2,3)10-47-53(44,45)50-52(42,43)46-9-14-19(49-51(39,40)41)18(36)24(48-14)32-12-31-17-21(26)29-11-30-22(17)32/h11-12,14,18-20,24,36-37H,4-10H2,1-3H3,(H,27,34)(H,28,38)(H,42,43)(H,44,45)(H2,26,29,30)(H2,39,40,41)/p-4/t14-,18-,19-,20+,24-/m1/s1", "InChIKey=OJFDKHTZOUZBOS-CITAKDKDSA-J", "C25H36N7O18P3S", "-4.0", "847.578", "851.136338", "851.135789", "852.143614", "890.099496", "874.125559", "858.151793", "869.170163", "850.129061", "886.105739", "910.150191", "57286", null, null, "MNXM133", "10064897 | 10231530 | 10600649 | 11673457 | 12917011 | 16476568 | 17236799 | 17371050 | 20378648 | 20463021 | 23485643 | 23751782 | 25478839 | 7911016 | 7913309 | 9553139" ], [ "79", "SLM:000000299", null, "(S)-3-hydroxy-3-methylglutaryl-CoA", null, null, "SLM:000508836", null, null, "C[C@](O)(CC([O-])=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12", "InChI=1S/C27H44N7O20P3S/c1-26(2,21(40)24(41)30-5-4-15(35)29-6-7-58-17(38)9-27(3,42)8-16(36)37)11-51-57(48,49)54-56(46,47)50-10-14-20(53-55(43,44)45)19(39)25(52-14)34-13-33-18-22(28)31-12-32-23(18)34/h12-14,19-21,25,39-40,42H,4-11H2,1-3H3,(H,29,35)(H,30,41)(H,36,37)(H,46,47)(H,48,49)(H2,28,31,32)(H2,43,44,45)/p-5/t14-,19-,20-,21+,25-,27+/m1/s1", "CABVTRNMFUVUDM-VRHQGPGLSA-I", "C27H39N7O20P3S", "-5.0", "906.62", null, null, null, null, null, null, null, null, null, null, "43074", null, null, null, "11673457 | 21357570 | 22847177 | 22865860 | 23751782 | 7913309 | 8027038" ], [ "80", "SLM:000000300", "Isomeric subspecies", "(R)-mevalonate", null, null, "SLM:000501327", null, null, "C[C@@](O)(CCO)CC([O-])=O", "InChI=1S/C6H12O4/c1-6(10,2-3-7)4-5(8)9/h7,10H,2-4H2,1H3,(H,8,9)/p-1/t6-/m1/s1", "KJTLQQUUPVSXIM-ZCFIWIBFSA-M", "C6H11O4", "-1.0", "147.14914", null, null, null, null, null, null, null, null, null, null, "36464", null, "HMDB59629", null, "21357570 | 9392419" ], [ "81", "SLM:000000301", "Isomeric subspecies", "(R)-5-phosphomevalonate", null, null, "SLM:000501327", null, null, "C[C@@](O)(CCOP([O-])([O-])=O)CC([O-])=O", "InChI=1S/C6H13O7P/c1-6(9,4-5(7)8)2-3-13-14(10,11)12/h9H,2-4H2,1H3,(H,7,8)(H2,10,11,12)/p-3/t6-/m1/s1", "OKZYCXHTTZZYSK-ZCFIWIBFSA-K", "C6H10O7P", "-3.0", "225.1132", null, null, null, null, null, null, null, null, null, null, "58146", null, "HMDB01343", null, "16519518 | 9392419" ], [ "82", "SLM:000000302", "Isomeric subspecies", "(R)-5-diphosphomevalonate", null, null, "SLM:000501327", null, null, "C[C@@](O)(CCOP([O-])(=O)OP([O-])([O-])=O)CC([O-])=O", "InChI=1S/C6H14O10P2/c1-6(9,4-5(7)8)2-3-15-18(13,14)16-17(10,11)12/h9H,2-4H2,1H3,(H,7,8)(H,13,14)(H2,10,11,12)/p-4/t6-/m1/s1", "SIGQQUBJQXSAMW-ZCFIWIBFSA-J", "C6H10O10P2", "-4.0", "304.0851", null, null, null, null, null, null, null, null, null, null, "57557", null, "HMDB01090", null, "16519518 | 9392419" ], [ "83", "SLM:000000303", "Isomeric subspecies", "isopentenyl diphosphate", null, null, "SLM:000508834", null, null, "CC(=C)CCOP([O-])(=O)OP([O-])([O-])=O", "InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)/p-3", "NUHSROFQTUXZQQ-UHFFFAOYSA-K", "C5H9O7P2", "-3.0", "243.0683", null, null, null, null, null, null, null, null, null, null, "128769", null, "HMDB01347", null, "10026212 | 11581264 | 12437513 | 15060088 | 16262699 | 16684881 | 17202134 | 25066056 | 2690933 | 8806705 | 9392419" ], [ "84", "SLM:000000304", "Isomeric subspecies", "dimethylallyl diphosphate", null, null, "SLM:000508834", null, null, "CC(C)=CCOP([O-])(=O)OP([O-])([O-])=O", "InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)/p-3", "CBIDRCWHNCKSTO-UHFFFAOYSA-K", "C5H9O7P2", "-3.0", "243.0683", null, null, null, null, null, null, null, null, null, null, "57623", null, "HMDB01120", null, "17202134 | 8806705" ], [ "85", "SLM:000000305", "Isomeric subspecies", "geranyl diphosphate", null, null, "SLM:000508829", null, null, "CC(C)=CCCC(C)=CCOP([O-])(=O)OP([O-])([O-])=O", "InChI=1S/C10H20O7P2/c1-9(2)5-4-6-10(3)7-8-16-19(14,15)17-18(11,12)13/h5,7H,4,6,8H2,1-3H3,(H,14,15)(H2,11,12,13)/p-3/b10-7+", "GVVPGTZRZFNKDS-JXMROGBWSA-K", "C10H17O7P2", "-3.0", "311.1853", null, null, null, null, null, null, null, null, null, null, "58057", null, "HMDB01285", null, "15060088 | 16684881 | 2690933" ], [ "86", "SLM:000000307", "Isomeric subspecies", "(2E,6E)-farnesyl diphosphate", null, null, "SLM:000508830", null, null, "CC(C)=CCCC(C)=CCCC(C)=CCOP([O-])(=O)OP([O-])([O-])=O", "InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)/p-3/b14-9+,15-11+", "VWFJDQUYCIWHTN-YFVJMOTDSA-K", "C15H25O7P2", "-3.0", "379.3023", null, null, null, null, null, null, null, null, null, null, "175763", null, "HMDB00961", null, "10026212 | 11581264 | 12437513 | 15060088 | 16262699 | 16684881 | 19933331 | 24531458 | 25066056 | 2690933" ], [ "88", "SLM:000000309", "Isomeric subspecies", "squalene", null, null, "SLM:000508832", null, null, "CC(C)=CCCC(C)=CCCC(C)=CCCC=C(/C)CCC=C(/C)CCC=C(C)C", "InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+", "YYGNTYWPHWGJRM-AAJYLUCBSA-N", "C30H50", "0.0", "410.718", null, null, null, null, null, null, null, null, null, null, "15440", null, null, null, "10666321 | 11181753 | 24531458" ], [ "89", "SLM:000000310", "Isomeric subspecies", "(S)-2,3-epoxysqualene", null, null, "SLM:000508832", null, null, null, null, null, null, "0.0", "0.0", null, null, null, null, null, null, null, null, null, null, "15441", null, null, null, "10666321 | 11181753 | 14766201 | 7639730" ], [ "90", "SLM:000000311", "Isomeric subspecies", "lanosterol", null, null, "SLM:000501264", null, null, "C[C@H](CCC=C(C)C)[C@H]1CC[C@@]2(C)C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@@H]1CC3", "InChI=1S/C30H50O/c1-20(2)10-9-11-21(3)22-14-18-30(8)24-12-13-25-27(4,5)26(31)16-17-28(25,6)23(24)15-19-29(22,30)7/h10,21-22,25-26,31H,9,11-19H2,1-8H3/t21-,22-,25+,26+,28-,29-,30+/m1/s1", "InChIKey=CAHGCLMLTWQZNJ-KJVWZVAPSA-N", "C30H50O", "0.0", "426.729", "426.386166", "426.385618", "427.393443", "465.349325", "449.375387", "433.401622", "444.419992", "425.37889", "461.355568", "485.400019", "16521", "LMST01010017", "HMDB01251", "MNXM482", "10544287 | 10672016 | 11328599 | 14766201 | 20149798 | 21525977 | 22178193 | 7639730" ], [ "91", "SLM:000000313", "Isomeric subspecies", "4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol", null, null, "SLM:000501264", null, null, "[H][C@@]1(CC=C2C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C", "InChI=1S/C29H46O/c1-19(2)9-8-10-20(3)22-12-13-23-21-11-14-25-27(4,5)26(30)16-18-29(25,7)24(21)15-17-28(22,23)6/h9,13,20,22,25-26,30H,8,10-12,14-18H2,1-7H3/t20-,22-,25+,26+,28-,29-/m1/s1", "InChIKey=LFQXEZVYNCBVDO-MOSRPKGSSA-N", "C29H46O", "0.0", "410.686", "410.354866", "410.354318", "411.362143", "449.318024", "433.344087", "417.370322", "428.388692", "409.34759", "445.324267", "469.368719", "17813", "LMST01010149", "HMDB01023", "MNXM1036", "10544287 | 11328599 | 11784322 | 12618959 | 20149798 | 9630650" ], [ "92", "SLM:000000314", "Isomeric subspecies", "4,4-dimethyl-5alpha-cholesta-8,24-dien-3beta-ol", null, null, "SLM:000501264", null, null, "[H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C", "InChI=1S/C29H48O/c1-19(2)9-8-10-20(3)22-12-13-23-21-11-14-25-27(4,5)26(30)16-18-29(25,7)24(21)15-17-28(22,23)6/h9,20,22-23,25-26,30H,8,10-18H2,1-7H3/t20-,22-,23+,25+,26+,28-,29-/m1/s1", "InChIKey=CHGIKSSZNBCNDW-SMXMGSDBSA-N", "C29H48O", "0.0", "412.702", "412.370516", "412.369968", "413.377793", "451.333674", "435.359737", "419.385972", "430.404342", "411.36324", "447.339917", "471.384369", "18364", "LMST01010176", null, "MNXM913", "11784322 | 12618959 | 21285510 | 9630650" ], [ "93", "SLM:000000315", "Isomeric subspecies", "4beta-methylzymosterol-4alpha-carboxylate", null, null, "SLM:000501306", null, null, "[H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@](C)(C([O-])=O)[C@]1([H])CC3)[C@H](C)CCC=C(C)C", "InChI=1S/C29H46O3/c1-18(2)8-7-9-19(3)21-11-12-22-20-10-13-24-28(5,23(20)14-16-27(21,22)4)17-15-25(30)29(24,6)26(31)32/h8,19,21-22,24-25,30H,7,9-17H2,1-6H3,(H,31,32)/p-1/t19-,21-,22+,24-,25+,27-,28-,29+/m1/s1", "InChIKey=MYWAIWDQTCHPTH-FFRXSHGDSA-M", "C29H45O3", "-1.0", "441.677", "442.344695", "442.344147", "443.351972", "481.307854", "465.333916", "449.360151", "460.378521", "441.337419", "477.314097", "501.358548", "64925", "LMST01010388", null, "MNXM37762", "14567972 | 21285510 | 9811880" ], [ "94", "SLM:000000316", "Isomeric subspecies", "3-dehydro-4-methylzymosterol", null, null, "SLM:000501263", null, null, "[H][C@@]12CCC3=C(CC[C@]4(C)[C@]([H])(CC[C@@]34[H])[C@H](C)CCC=C(C)C)[C@@]1(C)CCC(=O)C2C", "InChI=1S/C28H44O/c1-18(2)8-7-9-19(3)22-12-13-24-21-10-11-23-20(4)26(29)15-17-28(23,6)25(21)14-16-27(22,24)5/h8,19-20,22-24H,7,9-17H2,1-6H3/t19-,20?,22-,23+,24+,27-,28+/m1/s1", "InChIKey=DBPZYKHQDWKORQ-BEMLQNMRSA-N", "C28H44O", "0.0", "396.659", "396.339216", "396.338667", "397.346492", "435.302374", "419.328437", "403.354671", "414.373042", "395.33194", "431.308617", "455.353069", "50593", "LMST01010167", null, "MNXM1889", "14567972 | 20659585 | 9811880" ], [ "97", "SLM:000000319", "Isomeric subspecies", "5alpha-cholesta-8,24-dien-3beta-ol", null, null, "SLM:000501263", null, null, "[H][C@@]12CCC3=C(CC[C@]4(C)[C@]([H])(CC[C@@]34[H])[C@H](C)CCC=C(C)C)[C@@]1(C)CC[C@H](O)C2", "InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h7,19-21,23-24,28H,6,8-17H2,1-5H3/t19-,20+,21+,23-,24+,26+,27-/m1/s1", "InChIKey=CGSJXLIKVBJVRY-QLJXJWEDSA-N", "C27H44O", "0.0", "384.648", "384.339216", "384.338667", "385.346492", "423.302374", "407.328437", "391.354671", "402.373042", "383.33194", "419.308617", "443.353069", "18252", "LMST01010066", "HMDB06271", "MNXM574", "10672016 | 11165030 | 11171067 | 12133002 | 12829805 | 26114596 | 8798407 | 9894009" ], [ "99", "SLM:000000323", "Class", "Ceramide (t18:0)", "Cer(t18:0)", "N-acyl-4-hydroxysphinganine | N-acyl-phytosphingosine", "SLM:000399814", null, null, "CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@H](CO)NC([*])=O", null, null, "C19H38NO4R", "0.0", null, null, null, null, null, null, null, null, null, null, null, "31998", null, null, "MNXM731", "11006294 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Lipid IDLevelNameAbbreviation*Synonyms*Lipid class*ParentComponents*SMILES (pH7.3)InChI (pH7.3)...Exact m/z of [M+Li]+Exact m/z of [M+NH4]+Exact m/z of [M-H]-Exact m/z of [M+Cl]-Exact m/z of [M+OAc]-CHEBILIPID MAPSHMDBMetaNetXPMID
0SLM:000000002ClassCeramide (iso-d17:1(4E))Cer(iso-d17:1(4E))N-acyl-15-methylhexadecasphing-4-enineSLM:000399814NaNNaNCC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO)NC([*])=OInChI=none...NaNNaNNaNNaNNaN70846NaNNaNMNXM97012| 11443131 | 14685263 | 18390550 | 21325339 |...
3SLM:000000007ClassSphingomyelin (iso-d17:1(4E))SM(iso-d17:1(4E))N-acyl-15-methylhexadecasphing-4-enine-1-phosp...SLM:000001000NaNNaNCC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](COP([O-])(=O...InChI=none...NaNNaNNaNNaNNaN70775NaNNaNMNXM9711314685263 | 21926990 | 9603947
4SLM:000000035Isomeric subspeciessphinganineNaNNaNSLM:000390097NaNNaNCCCCCCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])COInChI=1S/C18H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12......308.313535319.331905300.290803336.267481360.31193257817LMSP01020001HMDB00269MNXM30210652340 | 10702247 | 10751414 | 10802064 | 10...
5SLM:000000042Isomeric subspeciescholesta-5,7-dien-3beta-olNaNNaNSLM:000501263NaNNaN[H][C@@]1(CC[C@@]2([H])C3=CC=C4C[C@@H](O)CC[C@...InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-2......391.354671402.373042383.331940419.308617443.35306917759LMST01010069HMDB00032MNXM71010329655 | 10344195 | 10786622 | 11230174 | 16...
6SLM:000000043Isomeric subspecieslathosteroneNaNNaNSLM:000501263NaNNaN[H][C@@]12CC=C3[C@]4([H])CC[C@]([H])([C@H](C)C...InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-2......391.354671402.373042383.331940419.308617443.35306971550NaNNaNMNXM9706519531354 | 22505847
..................................................................
595221SLM:000598072NaNall-trans-retinol--[retinol-binding protein]NaNNaNSLM:000000982NaNNaN[*][C@H](N-*)C(-*)=OInChI=none...NaNNaNNaNNaNNaN17336 | 83228NaNNaNNaN20628054 | 28758396
595222SLM:000598073NaNall-trans-retinyl heptanoateNaNNaNSLM:000000982NaNNaNC1(C)(C)C(\\C=C\\C(=C\\C=C\\C(=C\\COC(CCCCCC)=O)\\C)...InChI=1S/C27H42O2/c1-7-8-9-10-16-26(28)29-21-1......NaNNaNNaNNaNNaN138724NaNNaNNaN20628054 | 28758396
595223SLM:000598074NaN2-heptanoyl-sn-glycero-3-phosphocholineNaNNaNSLM:000000724NaNNaNP(OC[C@@H](CO)OC(=O)CCCCCC)(=O)(OCC[N+](C)(C)C...InChI=1S/C15H32NO7P/c1-5-6-7-8-9-15(18)23-14(1......NaNNaNNaNNaNNaN138266NaNNaNNaN20628054 | 22605381 | 28758396
595230SLM:000598083NaN12-hydroxy-(9Z)-octadecenoyl-CoANaNNaNSLM:000389958 | SLM:000390051NaNNaNS(C(CCCCCCC/C=C\\C[C@@H](CCCCCC)O)=O)CCNC(CCNC(...InChI=1S/C39H68N7O18P3S/c1-4-5-6-13-16-27(47)1......NaNNaNNaNNaNNaN139559NaNNaNNaN17084870 | 27758859
595245SLM:000598101NaNa mannosylinositol-1-phospho-N-(2-hydroxyacyl)...NaNNaNSLM:000000835NaNNaNOC[C@H]1OC(O[C@@H]2[C@@H](O)[C@H](O)[C@@H](O)[...InChI=none...NaNNaNNaNNaNNaN74994NaNNaNNaN12954640 | 9368028
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1318 rows × 29 columns

\n", "
" ], "text/plain": [ " Lipid ID Level \\\n", "0 SLM:000000002 Class \n", "3 SLM:000000007 Class \n", "4 SLM:000000035 Isomeric subspecies \n", "5 SLM:000000042 Isomeric subspecies \n", "6 SLM:000000043 Isomeric subspecies \n", "... ... ... \n", "595221 SLM:000598072 NaN \n", "595222 SLM:000598073 NaN \n", "595223 SLM:000598074 NaN \n", "595230 SLM:000598083 NaN \n", "595245 SLM:000598101 NaN \n", "\n", " Name Abbreviation* \\\n", "0 Ceramide (iso-d17:1(4E)) Cer(iso-d17:1(4E)) \n", "3 Sphingomyelin (iso-d17:1(4E)) SM(iso-d17:1(4E)) \n", "4 sphinganine NaN \n", "5 cholesta-5,7-dien-3beta-ol NaN \n", "6 lathosterone NaN \n", "... ... ... \n", "595221 all-trans-retinol--[retinol-binding protein] NaN \n", "595222 all-trans-retinyl heptanoate NaN \n", "595223 2-heptanoyl-sn-glycero-3-phosphocholine NaN \n", "595230 12-hydroxy-(9Z)-octadecenoyl-CoA NaN \n", "595245 a mannosylinositol-1-phospho-N-(2-hydroxyacyl)... NaN \n", "\n", " Synonyms* \\\n", "0 N-acyl-15-methylhexadecasphing-4-enine \n", "3 N-acyl-15-methylhexadecasphing-4-enine-1-phosp... \n", "4 NaN \n", "5 NaN \n", "6 NaN \n", "... ... \n", "595221 NaN \n", "595222 NaN \n", "595223 NaN \n", "595230 NaN \n", "595245 NaN \n", "\n", " Lipid class* Parent Components* \\\n", "0 SLM:000399814 NaN NaN \n", "3 SLM:000001000 NaN NaN \n", "4 SLM:000390097 NaN NaN \n", "5 SLM:000501263 NaN NaN \n", "6 SLM:000501263 NaN NaN \n", "... ... ... ... \n", "595221 SLM:000000982 NaN NaN \n", "595222 SLM:000000982 NaN NaN \n", "595223 SLM:000000724 NaN NaN \n", "595230 SLM:000389958 | SLM:000390051 NaN NaN \n", "595245 SLM:000000835 NaN NaN \n", "\n", " SMILES (pH7.3) \\\n", "0 CC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](CO)NC([*])=O \n", "3 CC(C)CCCCCCCCC\\C=C\\[C@@H](O)[C@H](COP([O-])(=O... \n", "4 CCCCCCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])CO \n", "5 [H][C@@]1(CC[C@@]2([H])C3=CC=C4C[C@@H](O)CC[C@... \n", "6 [H][C@@]12CC=C3[C@]4([H])CC[C@]([H])([C@H](C)C... \n", "... ... \n", "595221 [*][C@H](N-*)C(-*)=O \n", "595222 C1(C)(C)C(\\C=C\\C(=C\\C=C\\C(=C\\COC(CCCCCC)=O)\\C)... \n", "595223 P(OC[C@@H](CO)OC(=O)CCCCCC)(=O)(OCC[N+](C)(C)C... \n", "595230 S(C(CCCCCCC/C=C\\C[C@@H](CCCCCC)O)=O)CCNC(CCNC(... \n", "595245 OC[C@H]1OC(O[C@@H]2[C@@H](O)[C@H](O)[C@@H](O)[... \n", "\n", " InChI (pH7.3) ... \\\n", "0 InChI=none ... \n", "3 InChI=none ... \n", "4 InChI=1S/C18H39NO2/c1-2-3-4-5-6-7-8-9-10-11-12... ... \n", "5 InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-2... ... \n", "6 InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-2... ... \n", "... ... ... \n", "595221 InChI=none ... \n", "595222 InChI=1S/C27H42O2/c1-7-8-9-10-16-26(28)29-21-1... ... \n", "595223 InChI=1S/C15H32NO7P/c1-5-6-7-8-9-15(18)23-14(1... ... \n", "595230 InChI=1S/C39H68N7O18P3S/c1-4-5-6-13-16-27(47)1... ... \n", "595245 InChI=none ... \n", "\n", " Exact m/z of [M+Li]+ Exact m/z of [M+NH4]+ Exact m/z of [M-H]- \\\n", "0 NaN NaN NaN \n", "3 NaN NaN NaN \n", "4 308.313535 319.331905 300.290803 \n", "5 391.354671 402.373042 383.331940 \n", "6 391.354671 402.373042 383.331940 \n", "... ... ... ... \n", "595221 NaN NaN NaN \n", "595222 NaN NaN NaN \n", "595223 NaN NaN NaN \n", "595230 NaN NaN NaN \n", "595245 NaN NaN NaN \n", "\n", " Exact m/z of [M+Cl]- Exact m/z of [M+OAc]- CHEBI \\\n", "0 NaN NaN 70846 \n", "3 NaN NaN 70775 \n", "4 336.267481 360.311932 57817 \n", "5 419.308617 443.353069 17759 \n", "6 419.308617 443.353069 71550 \n", "... ... ... ... \n", "595221 NaN NaN 17336 | 83228 \n", "595222 NaN NaN 138724 \n", "595223 NaN NaN 138266 \n", "595230 NaN NaN 139559 \n", "595245 NaN NaN 74994 \n", "\n", " LIPID MAPS HMDB MetaNetX \\\n", "0 NaN NaN MNXM97012 \n", "3 NaN NaN MNXM97113 \n", "4 LMSP01020001 HMDB00269 MNXM302 \n", "5 LMST01010069 HMDB00032 MNXM710 \n", "6 NaN NaN MNXM97065 \n", "... ... ... ... \n", "595221 NaN NaN NaN \n", "595222 NaN NaN NaN \n", "595223 NaN NaN NaN \n", "595230 NaN NaN NaN \n", "595245 NaN NaN NaN \n", "\n", " PMID \n", "0 | 11443131 | 14685263 | 18390550 | 21325339 |... \n", "3 14685263 | 21926990 | 9603947 \n", "4 10652340 | 10702247 | 10751414 | 10802064 | 10... \n", "5 10329655 | 10344195 | 10786622 | 11230174 | 16... \n", "6 19531354 | 22505847 \n", "... ... \n", "595221 20628054 | 28758396 \n", "595222 20628054 | 28758396 \n", "595223 20628054 | 22605381 | 28758396 \n", "595230 17084870 | 27758859 \n", "595245 12954640 | 9368028 \n", "\n", "[1318 rows x 29 columns]" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "cols_with_split_chars = check_for_split_characters(df_swisslipids, delimiter='|')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Okay wow! So these are all the columns we have found with split characters..." ] }, { "cell_type": "code", "execution_count": 5, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "['Abbreviation*', 'Synonyms*', 'Lipid class*', 'CHEBI', 'PMID']" ] }, "execution_count": 5, "metadata": {}, "output_type": "execute_result" } ], "source": [ "cols_with_split_chars" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "We can also check for different types of characters if we know that they will be present. For instance SL uses the `/` character for Components*, but this is also used by another of columns like the lipid names themselves or smiles and inchi." ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Checking split characters (/) in Lipid ID\n", "No rows found\n", "\n", "Checking split characters (/) in Level\n", "No rows found\n", "\n", "Checking split characters (/) in Lipid class*\n", "No rows found\n", "\n", "Checking split characters (/) in Parent\n", "No rows found\n", "\n", "Checking split characters (/) in Components*\n", "Found 708725 rows with split characters\n" ] }, { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "string" }, { "name": "Lipid class*", "rawType": "object", "type": "string" }, { "name": "Parent", "rawType": "object", "type": "unknown" }, { "name": "Components*", "rawType": "object", "type": "string" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "string" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "string" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Cl]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+OAc]- ", "rawType": "float64", "type": "float" }, { "name": "CHEBI", "rawType": "object", "type": "unknown" }, { "name": "LIPID MAPS", "rawType": "object", "type": "unknown" }, { "name": "HMDB", "rawType": "object", "type": "unknown" }, { "name": "MetaNetX", "rawType": "object", "type": "unknown" }, { "name": "PMID", "rawType": "object", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "d8b1e3b3-87af-43c5-873f-879263e369a3", "rows": [ [ "164", "SLM:000000422", "Isomeric subspecies", "SLM:000000329", "SLM:000081844", "SLM:000000418 (sn2) / SLM:000000510 (sn1)", "InChIKey=OPVZUEPSMJNLOM-QEJMHMKOSA-L", "C37H69O8P", "-2.0", "672.913818", "674.488647", "674.488098", "675.495911", "713.451843", "697.477905", "681.504089", "692.522461", "673.481384", "709.458069", "733.502502", "64839", "LMGP10010032", "HMDB07859", "MNXM66476", "10359651 | 11788596 | 12963729 | 16620771 | 17675291 | 18772128 | 19114731 | 19318427 | 19801371 | 20016004 | 20231281 | 20363836 | 21173190 | 21873652 | 22090344 | 24333445 | 24628888 | 26417903 | 8626588 | 9159104" ], [ "229", "SLM:000000498", "Isomeric subspecies", "SLM:000000324", "SLM:000105249", "SLM:000000296 (sn2) / SLM:000000826 (sn1)", "InChIKey=KRTOMQDUKGRFDJ-ZAHDIIMDSA-M", "C47H82O13P", "-1.0", "886.120483", "886.557129", "886.55658", "887.564392", "925.520264", "909.546326", "893.572571", "904.590942", "885.549866", "921.52655", "945.570984", "133606", "LMGP06010010", "HMDB09815", "MNXM75683", "22942276 | 23097495 | 23472195 | 8300559" ], [ "269", "SLM:000000557", "Isomeric subspecies", "SLM:000000261", "SLM:000088147", "SLM:000000510 (sn1) / SLM:000000826 (sn2)", "InChIKey=PZNPLUBHRSSFHT-RRHRGVEJSA-N", "C42H84NO8P", "0.0", "762.09198", "761.593445", "761.592896", "762.600708", "800.556641", "784.582703", "768.608887", "779.627258", null, "796.562866", "820.6073", "73000", "LMGP01010573", "HMDB07970", "MNXM69304", "18195019 | 19416660 | 22923616 | 27399000" ], [ "332", "SLM:000000636", "Isomeric subspecies", "SLM:000000329", "SLM:000082164", "SLM:000000418 (sn1) / SLM:000000510 (sn2)", "InChIKey=ZSXHMDPHNCOWSV-QEJMHMKOSA-L", "C37H69O8P", "-2.0", "672.913818", "674.488647", "674.488098", "675.495911", "713.451843", "697.477905", "681.504089", "692.522461", "673.481384", "709.458069", "733.502502", "74551", "LMGP10010964", null, "MNXM66662", "16620771 | 18606822 | 19318427 | 19801371 | 20363836 | 21873652 | 22560221 | 8626588 | 9159104 | 9461603" ], [ "333", "SLM:000000637", "Isomeric subspecies", "SLM:000000329", "SLM:000082168", "SLM:000000418 (sn1) / SLM:000000826 (sn2)", "InChIKey=XIERONXOJKEALF-PXYGFXEISA-L", "C39H73O8P", "-2.0", "700.96698", "702.519958", "702.519409", "703.527222", "741.483093", "725.509155", "709.5354", "720.553772", "701.512695", "737.48938", "761.533813", "74552", "LMGP10010963", null, "MNXM66667", "16620771 | 18606822 | 19318427 | 19801371 | 21173190 | 21873652 | 9461603" ], [ "335", "SLM:000000639", "Isomeric subspecies", "SLM:000000329", "SLM:000082039", "SLM:000000418 (sn2) / SLM:000001095 (sn1)", "InChIKey=NSSGSPXMZNTFGQ-QJEXQQAGSA-L", "C38H71O8P", "-2.0", "686.94043", "688.504333", "688.503784", "689.511597", "727.467468", "711.49353", "695.519775", "706.538147", "687.497009", "723.473694", "747.518188", "74556", "LMGP10010894", null, "MNXM66541", "20363836 | 20694142 | 21173190" ], [ "337", "SLM:000000641", "Isomeric subspecies", "SLM:000000329", "SLM:000082104", "SLM:000000418 (sn2) / SLM:000000826 (sn1)", "InChIKey=HHMKVXGZZUOMHM-XZRWTQCASA-L", "C39H73O8P", "-2.0", "700.96698", "702.519958", "702.519409", "703.527222", "741.483093", "725.509155", "709.5354", "720.553772", "701.512695", "737.48938", "761.533813", "74560", "LMGP10010037", null, "MNXM66635", "17675291 | 19801371 | 20231281 | 20363836 | 21173190 | 24333445 | 25375833 | 26417903 | 8626588 | 9159104" ], [ "338", "SLM:000000642", "Isomeric subspecies", "SLM:000000329", "SLM:000082167", "SLM:000000418 (sn1) / SLM:000001095 (sn2)", "InChIKey=PWVGZLUPKLWHNU-QJEXQQAGSA-L", "C38H71O8P", "-2.0", "686.94043", "688.504333", "688.503784", "689.511597", "727.467468", "711.49353", "695.519775", "706.538147", "687.497009", "723.473694", "747.518188", "74558", "LMGP10010325", null, "MNXM66664", "20363836 | 21173190 | 21873652" ], [ "339", "SLM:000000643", "Isomeric subspecies", "SLM:000000329", "SLM:000082161", "SLM:000000418 (sn1) / SLM:000000825 (sn2)", "InChIKey=SOEWBJRWWSGRKM-NTEJXHNLSA-L", "C35H65O8P", "-2.0", "644.860718", "646.457336", "646.456787", "647.464661", "685.420532", "669.446594", "653.472839", "664.491211", "645.450073", "681.426758", "705.471191", "74579", "LMGP10010882", null, "MNXM66658", "19318427 | 20363836 | 21173190 | 21873652 | 9461603" ], [ "340", "SLM:000000644", "Isomeric subspecies", "SLM:000000329", "SLM:000082163", "SLM:000000418 (sn1) / SLM:000001199 (sn2)", "InChIKey=CTDPEXWSWAIKJE-RZCWWDNZSA-L", "C36H67O8P", "-2.0", "658.887207", "660.473022", "660.472473", "661.480286", "699.436157", "683.462219", "667.488464", "678.506836", "659.465759", "695.442383", "719.486877", "74578", "LMGP10010323", null, "MNXM66660", "20363836 | 21173190 | 21873652" ], [ "342", "SLM:000000646", "Isomeric subspecies", "SLM:000000329", "SLM:000082494", "SLM:000000418 (sn2) / SLM:000000829 (sn1)", "InChIKey=CHEVROLFHYXCIJ-PIIKPTFNSA-L", "C41H77O8P", "-2.0", "729.020081", "730.55127", "730.55072", "731.558533", "769.514404", "753.540466", "737.566711", "748.585083", "729.544006", "765.52063", "789.565125", "74584", "LMGP10010953", null, "MNXM66893", "21873652" ], [ "344", "SLM:000000648", "Isomeric subspecies", "SLM:000000329", "SLM:000081649", "SLM:000000418 (sn2) / SLM:000000825 (sn1)", "InChIKey=IZDWXHIHOWRUTO-NTEJXHNLSA-L", "C35H65O8P", "-2.0", "644.860718", "646.457336", "646.456787", "647.464661", "685.420532", "669.446594", "653.472839", "664.491211", "645.450073", "681.426758", "705.471191", "74586", "LMGP10010019", null, "MNXM66349", "19318427 | 21873652" ], [ "347", "SLM:000000651", "Isomeric subspecies", "SLM:000000261", "SLM:000088148", "SLM:000000418 (sn2) / SLM:000000510 (sn1)", "InChIKey=WTJKGGKOPKCXLL-VYOBOKEXSA-N", "C42H82NO8P", "0.0", "760.076111", "759.57782", "759.577271", "760.585083", "798.540955", "782.567017", "766.593262", "777.611633", null, "794.54718", "818.591675", "73001", "LMGP01010005", "HMDB07972", "MNXM7970", "10191259 | 10455175 | 10681567 | 10744668 | 10893425 | 11112443 | 11401559 | 11788596 | 14636062 | 14709560 | 16704971 | 16837646 | 17158102 | 17213206 | 17293613 | 17726007 | 18195019 | 18287005 | 18772128 | 19047760 | 19416660 | 19615464 | 19864461 | 21498505 | 29666162 | 29724779 | 8300559 | 9442064 | 9442065" ], [ "348", "SLM:000000652", "Isomeric subspecies", "SLM:000000261", "SLM:000088144", "SLM:000000411 (sn2) / SLM:000000510 (sn1)", "InChIKey=QIBZFHLFHCIUOT-NPBIGWJUSA-N", "C40H78NO8P", "0.0", "732.02301", "731.546509", "731.545959", "732.553772", "770.509644", "754.535706", "738.561951", "749.580322", null, "766.51593", "790.560364", "74000", "LMGP01010566", "HMDB07969", "MNXM69299", "17726007 | 18772128 | 19416660 | 19864461" ], [ "349", "SLM:000000653", "Isomeric subspecies", "SLM:000000329", "SLM:000081840", "SLM:000000411 (sn2) / SLM:000000510 (sn1)", "InChIKey=SCNLPRDASXIFJK-BSAOHMCWSA-L", "C35H65O8P", "-2.0", "644.860718", "646.457336", "646.456787", "647.464661", "685.420532", "669.446594", "653.472839", "664.491211", "645.450073", "681.426758", "705.471191", "73998", "LMGP10010911", null, "MNXM66470", "18772128" ], [ "352", "SLM:000000657", "Isomeric subspecies", "SLM:000000261", "SLM:000088468", "SLM:000000418 (sn1) / SLM:000000510 (sn2)", "InChIKey=RRVPPYNAZJRZFR-VYOBOKEXSA-N", "C42H82NO8P", "0.0", "760.076111", "759.57782", "759.577271", "760.585083", "798.540955", "782.567017", "766.593262", "777.611633", null, "794.54718", "818.591675", "74667", "LMGP01010884", "HMDB08100", "MNXM69657", "10484737 | 16704971 | 16837646 | 18195019 | 18772128 | 22605381 | 29666162 | 29724779" ], [ "354", "SLM:000000661", "Isomeric subspecies", "SLM:000000239", "SLM:000094448", "SLM:000000411 (sn2) / SLM:000000510 (sn1)", "InChIKey=CZOSTDZGCCEZTJ-WMHOIYFHSA-N", "C37H72NO8P", "0.0", "689.943176", "689.499573", "689.499023", "690.506836", "728.462708", "712.48877", "696.515015", "707.533386", "688.492249", "724.468933", "748.513428", "73999", "LMGP02011228", "HMDB08924", "MNXM71406", "18772128 | 19864461" ], [ "355", "SLM:000000662", "Isomeric subspecies", "SLM:000000239", "SLM:000094452", "SLM:000000418 (sn2) / SLM:000000510 (sn1)", "InChIKey=FHQVHHIBKUMWTI-OTMQOFQLSA-N", "C39H76NO8P", "0.0", "717.996399", "717.530884", "717.530334", "718.538147", "756.494019", "740.520081", "724.546326", "735.564697", "716.52356", "752.500244", "776.544678", "73007", "LMGP02010009", "HMDB08927", "MNXM32969", "10191259 | 10455175 | 10681567 | 11788596 | 16837646 | 18287005 | 18772128 | 19864461 | 23071296 | 9442064" 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Lipid IDLevelLipid class*ParentComponents*InChI key (pH7.3)Formula (pH7.3)Charge (pH7.3)Mass (pH7.3)Exact Mass (neutral form)...Exact m/z of [M+Li]+Exact m/z of [M+NH4]+Exact m/z of [M-H]-Exact m/z of [M+Cl]-Exact m/z of [M+OAc]-CHEBILIPID MAPSHMDBMetaNetXPMID
164SLM:000000422Isomeric subspeciesSLM:000000329SLM:000081844SLM:000000418 (sn2) / SLM:000000510 (sn1)InChIKey=OPVZUEPSMJNLOM-QEJMHMKOSA-LC37H69O8P-2.0672.913818674.488647...681.504089692.522461673.481384709.458069733.50250264839LMGP10010032HMDB07859MNXM6647610359651 | 11788596 | 12963729 | 16620771 | 17...
229SLM:000000498Isomeric subspeciesSLM:000000324SLM:000105249SLM:000000296 (sn2) / SLM:000000826 (sn1)InChIKey=KRTOMQDUKGRFDJ-ZAHDIIMDSA-MC47H82O13P-1.0886.120483886.557129...893.572571904.590942885.549866921.526550945.570984133606LMGP06010010HMDB09815MNXM7568322942276 | 23097495 | 23472195 | 8300559
269SLM:000000557Isomeric subspeciesSLM:000000261SLM:000088147SLM:000000510 (sn1) / SLM:000000826 (sn2)InChIKey=PZNPLUBHRSSFHT-RRHRGVEJSA-NC42H84NO8P0.0762.091980761.593445...768.608887779.627258NaN796.562866820.60730073000LMGP01010573HMDB07970MNXM6930418195019 | 19416660 | 22923616 | 27399000
332SLM:000000636Isomeric subspeciesSLM:000000329SLM:000082164SLM:000000418 (sn1) / SLM:000000510 (sn2)InChIKey=ZSXHMDPHNCOWSV-QEJMHMKOSA-LC37H69O8P-2.0672.913818674.488647...681.504089692.522461673.481384709.458069733.50250274551LMGP10010964NaNMNXM6666216620771 | 18606822 | 19318427 | 19801371 | 20...
333SLM:000000637Isomeric subspeciesSLM:000000329SLM:000082168SLM:000000418 (sn1) / SLM:000000826 (sn2)InChIKey=XIERONXOJKEALF-PXYGFXEISA-LC39H73O8P-2.0700.966980702.519958...709.535400720.553772701.512695737.489380761.53381374552LMGP10010963NaNMNXM6666716620771 | 18606822 | 19318427 | 19801371 | 21...
..................................................................
745172SLM:000748034Isomeric subspeciesSLM:000000084NaNSLM:000000048 (sn1) / SLM:000001195 (sn2)InChIKey=LJSBNBPNSBKZCI-JNOBRDIFSA-LC33H57N3O15P2-2.0NaN799.342142...806.357598817.375968798.334866834.311543858.355995NaNNaNNaNNaNNaN
745173SLM:000748035Isomeric subspeciesSLM:000000084NaNSLM:000000048 (sn1) / SLM:000001196 (sn2)InChIKey=ODNYDZLXLRZPCJ-GPTQCAHZSA-LC35H61N3O15P2-2.0NaN827.373442...834.388898845.407268826.366166862.342844886.387295NaNNaNNaNNaNNaN
745174SLM:000748036Isomeric subspeciesSLM:000000084NaNSLM:000000048 (sn1) / SLM:000000853 (sn2)InChIKey=FJIBTCUXUBRYKG-QOTCTSOZSA-LC37H65N3O15P2-2.0NaN855.404743...862.420198873.438568854.397466890.374144914.418595NaNNaNNaNNaNNaN
745175SLM:000748037Isomeric subspeciesSLM:000000084NaNSLM:000000048 (sn1) / SLM:000001197 (sn2)InChIKey=AIBKQADSQWEVSS-HUKRWTLJSA-LC42H75N3O15P2-2.0NaN925.482993...932.498448943.516818924.475716960.452394984.496846NaNNaNHMDB0116248NaNNaN
745176SLM:000748038Isomeric subspeciesSLM:000000084NaNSLM:000000047 (sn2) / SLM:000000048 (sn1)InChIKey=PIZFKSVTEGNINS-BQUKFSKHSA-LC44H79N3O15P2-2.0NaN953.514293...960.529748971.548118952.507016988.4836941012.528146NaNNaNHMDB0116250NaNNaN
\n", "

708725 rows × 24 columns

\n", "
" ], "text/plain": [ " Lipid ID Level Lipid class* Parent \\\n", "164 SLM:000000422 Isomeric subspecies SLM:000000329 SLM:000081844 \n", "229 SLM:000000498 Isomeric subspecies SLM:000000324 SLM:000105249 \n", "269 SLM:000000557 Isomeric subspecies SLM:000000261 SLM:000088147 \n", "332 SLM:000000636 Isomeric subspecies SLM:000000329 SLM:000082164 \n", "333 SLM:000000637 Isomeric subspecies SLM:000000329 SLM:000082168 \n", "... ... ... ... ... \n", "745172 SLM:000748034 Isomeric subspecies SLM:000000084 NaN \n", "745173 SLM:000748035 Isomeric subspecies SLM:000000084 NaN \n", "745174 SLM:000748036 Isomeric subspecies SLM:000000084 NaN \n", "745175 SLM:000748037 Isomeric subspecies SLM:000000084 NaN \n", "745176 SLM:000748038 Isomeric subspecies SLM:000000084 NaN \n", "\n", " Components* \\\n", "164 SLM:000000418 (sn2) / SLM:000000510 (sn1) \n", "229 SLM:000000296 (sn2) / SLM:000000826 (sn1) \n", "269 SLM:000000510 (sn1) / SLM:000000826 (sn2) \n", "332 SLM:000000418 (sn1) / SLM:000000510 (sn2) \n", "333 SLM:000000418 (sn1) / SLM:000000826 (sn2) \n", "... ... \n", "745172 SLM:000000048 (sn1) / SLM:000001195 (sn2) \n", "745173 SLM:000000048 (sn1) / SLM:000001196 (sn2) \n", "745174 SLM:000000048 (sn1) / SLM:000000853 (sn2) \n", "745175 SLM:000000048 (sn1) / SLM:000001197 (sn2) \n", "745176 SLM:000000047 (sn2) / SLM:000000048 (sn1) \n", "\n", " InChI key (pH7.3) Formula (pH7.3) Charge (pH7.3) \\\n", "164 InChIKey=OPVZUEPSMJNLOM-QEJMHMKOSA-L C37H69O8P -2.0 \n", "229 InChIKey=KRTOMQDUKGRFDJ-ZAHDIIMDSA-M C47H82O13P -1.0 \n", "269 InChIKey=PZNPLUBHRSSFHT-RRHRGVEJSA-N C42H84NO8P 0.0 \n", "332 InChIKey=ZSXHMDPHNCOWSV-QEJMHMKOSA-L C37H69O8P -2.0 \n", "333 InChIKey=XIERONXOJKEALF-PXYGFXEISA-L C39H73O8P -2.0 \n", "... ... ... ... \n", "745172 InChIKey=LJSBNBPNSBKZCI-JNOBRDIFSA-L C33H57N3O15P2 -2.0 \n", "745173 InChIKey=ODNYDZLXLRZPCJ-GPTQCAHZSA-L C35H61N3O15P2 -2.0 \n", "745174 InChIKey=FJIBTCUXUBRYKG-QOTCTSOZSA-L C37H65N3O15P2 -2.0 \n", "745175 InChIKey=AIBKQADSQWEVSS-HUKRWTLJSA-L C42H75N3O15P2 -2.0 \n", "745176 InChIKey=PIZFKSVTEGNINS-BQUKFSKHSA-L C44H79N3O15P2 -2.0 \n", "\n", " Mass (pH7.3) Exact Mass (neutral form) ... Exact m/z of [M+Li]+ \\\n", "164 672.913818 674.488647 ... 681.504089 \n", "229 886.120483 886.557129 ... 893.572571 \n", "269 762.091980 761.593445 ... 768.608887 \n", "332 672.913818 674.488647 ... 681.504089 \n", "333 700.966980 702.519958 ... 709.535400 \n", "... ... ... ... ... \n", "745172 NaN 799.342142 ... 806.357598 \n", "745173 NaN 827.373442 ... 834.388898 \n", "745174 NaN 855.404743 ... 862.420198 \n", "745175 NaN 925.482993 ... 932.498448 \n", "745176 NaN 953.514293 ... 960.529748 \n", "\n", " Exact m/z of [M+NH4]+ Exact m/z of [M-H]- Exact m/z of [M+Cl]- \\\n", "164 692.522461 673.481384 709.458069 \n", "229 904.590942 885.549866 921.526550 \n", "269 779.627258 NaN 796.562866 \n", "332 692.522461 673.481384 709.458069 \n", "333 720.553772 701.512695 737.489380 \n", "... ... ... ... \n", "745172 817.375968 798.334866 834.311543 \n", "745173 845.407268 826.366166 862.342844 \n", "745174 873.438568 854.397466 890.374144 \n", "745175 943.516818 924.475716 960.452394 \n", "745176 971.548118 952.507016 988.483694 \n", "\n", " Exact m/z of [M+OAc]- CHEBI LIPID MAPS HMDB MetaNetX \\\n", "164 733.502502 64839 LMGP10010032 HMDB07859 MNXM66476 \n", "229 945.570984 133606 LMGP06010010 HMDB09815 MNXM75683 \n", "269 820.607300 73000 LMGP01010573 HMDB07970 MNXM69304 \n", "332 733.502502 74551 LMGP10010964 NaN MNXM66662 \n", "333 761.533813 74552 LMGP10010963 NaN MNXM66667 \n", "... ... ... ... ... ... \n", "745172 858.355995 NaN NaN NaN NaN \n", "745173 886.387295 NaN NaN NaN NaN \n", "745174 914.418595 NaN NaN NaN NaN \n", "745175 984.496846 NaN NaN HMDB0116248 NaN \n", "745176 1012.528146 NaN NaN HMDB0116250 NaN \n", "\n", " PMID \n", "164 10359651 | 11788596 | 12963729 | 16620771 | 17... \n", "229 22942276 | 23097495 | 23472195 | 8300559 \n", "269 18195019 | 19416660 | 22923616 | 27399000 \n", "332 16620771 | 18606822 | 19318427 | 19801371 | 20... \n", "333 16620771 | 18606822 | 19318427 | 19801371 | 21... \n", "... ... \n", "745172 NaN \n", "745173 NaN \n", "745174 NaN \n", "745175 NaN \n", "745176 NaN \n", "\n", "[708725 rows x 24 columns]" ] }, "metadata": {}, "output_type": "display_data" }, { "name": "stdout", "output_type": "stream", "text": [ "Checking split characters (/) in InChI key (pH7.3)\n", "No rows found\n", "\n", "Checking split characters (/) in Formula (pH7.3)\n", "No rows found\n", "\n", "Checking split characters (/) in Charge (pH7.3)\n", "Not a string column\n", "\n", "Checking split characters (/) in Mass (pH7.3)\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact Mass (neutral form)\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M.]+\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M+H]+\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M+K]+ \n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M+Na]+\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M+Li]+\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M+NH4]+\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M-H]-\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M+Cl]-\n", "Not a string column\n", "\n", "Checking split characters (/) in Exact m/z of [M+OAc]- \n", "Not a string column\n", "\n", "Checking split characters (/) in CHEBI\n", "No rows found\n", "\n", "Checking split characters (/) in LIPID MAPS\n", "No rows found\n", "\n", "Checking split characters (/) in HMDB\n", "No rows found\n", "\n", "Checking split characters (/) in MetaNetX\n", "No rows found\n", "\n", "Checking split characters (/) in PMID\n", "No rows found\n", "\n" ] }, { "data": { "text/plain": [ "['Components*']" ] }, "execution_count": 6, "metadata": {}, "output_type": "execute_result" } ], "source": [ "check_for_split_characters(df_swisslipids.drop(columns=['Name','Abbreviation*','Synonyms*','SMILES (pH7.3)','InChI (pH7.3)']), delimiter='/')" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "These double entries for the classes will be important to take into account for our class hierarchy, because if we don't many of these Class level entries will become disjointed in the ontology. \n", "\n", "To help us handle this connection we will split it into two using the `split_and_expand_large` utility function, but we will come back to this a bit later..." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "For now we will also add another column for components, so that later we can have both the actual component with location (e.g. sn) and a parsed version where we just have the SL " ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [], "source": [ "df_swisslipids['Components_parsed'] = df_swisslipids['Components*']" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now we can melt to start creating the edges df" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### Building the edges df" ] }, { "cell_type": "code", "execution_count": 8, "metadata": {}, "outputs": [], "source": [ "# # Split the 'Lipid class*' column into multiple rows\n", "# df_swisslipids_splitexp = split_and_expand_large(\n", "# df_swisslipids, #.assign(from_layer_col='swisslipids')\n", "# split_col='Lipid class*', \n", "# expand_cols=['Lipid ID', 'Level', 'Name', 'Abbreviation*',\n", "# 'CHEBI', 'LIPID MAPS', 'HMDB', 'MetaNetX', 'PMID','Synonyms*','Parent','Components*','Components_parsed'], #'from_layer_col'\n", "# delimiter='|'\n", "# )" ] }, { "cell_type": "code", "execution_count": 9, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "melted_column", "rawType": "object", "type": "string" }, { "name": "value", "rawType": "object", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "167f4729-65d6-4aef-a2cd-7d261504b0a9", "rows": [ [ "0", "SLM:000000002", "CHEBI", "70846" ], [ "1", "SLM:000000003", "CHEBI", "70771" ], [ "2", "SLM:000000006", "CHEBI", "70829" ], [ "3", "SLM:000000007", "CHEBI", "70775" ], [ "4", "SLM:000000035", "CHEBI", "57817" ], [ "5", "SLM:000000042", "CHEBI", "17759" ], [ "6", "SLM:000000043", "CHEBI", "71550" ], [ "7", "SLM:000000044", "CHEBI", "71542" ], [ "8", "SLM:000000047", "CHEBI", "70826" ], [ "9", "SLM:000000048", "CHEBI", "70838" ], [ "10", "SLM:000000084", "CHEBI", "58332" ], [ "11", "SLM:000000101", "CHEBI", "60110" ], [ "12", "SLM:000000102", "CHEBI", "62237" ], [ "13", "SLM:000000119", "CHEBI", "57939" ], [ "14", "SLM:000000139", "CHEBI", "71541" ], [ "15", "SLM:000000140", "CHEBI", "71569" ], [ "16", "SLM:000000141", "CHEBI", "17585" ], [ "17", "SLM:000000147", "CHEBI", "71466" ], [ "18", "SLM:000000149", "CHEBI", "71464" ], [ "19", "SLM:000000178", "CHEBI", "71377" ], [ "20", "SLM:000000179", "CHEBI", "71375" ], [ "21", "SLM:000000180", "CHEBI", "71378" ], [ "22", "SLM:000000181", "CHEBI", "71380" ], [ "23", "SLM:000000182", "CHEBI", "71381" ], [ "24", "SLM:000000183", "CHEBI", "71385" ], [ "25", "SLM:000000184", "CHEBI", "71388" ], [ "26", "SLM:000000185", "CHEBI", "70938" ], [ "27", "SLM:000000186", "CHEBI", "70951" ], [ "28", "SLM:000000187", "CHEBI", "70911" ], [ "29", "SLM:000000188", "CHEBI", "70918" ], [ "30", "SLM:000000189", "CHEBI", "70920" ], [ "31", "SLM:000000190", "CHEBI", "71384" ], [ "32", "SLM:000000191", "CHEBI", "71386" ], [ "33", "SLM:000000193", "CHEBI", "17168" ], [ "34", "SLM:000000194", "CHEBI", "71581" ], [ "35", "SLM:000000195", "CHEBI", "18378" ], [ "36", "SLM:000000196", "CHEBI", "70903" ], [ "37", "SLM:000000197", "CHEBI", "70910" ], [ "38", "SLM:000000198", "CHEBI", "71379" ], [ "39", "SLM:000000199", "CHEBI", "70946" ], [ "40", "SLM:000000200", "CHEBI", "70939" ], [ "41", "SLM:000000201", "CHEBI", "70932" ], [ "42", "SLM:000000202", "CHEBI", "16125" ], [ "43", "SLM:000000209", "CHEBI", "67108" ], [ "44", "SLM:000000210", "CHEBI", "67109" ], [ "45", "SLM:000000211", "CHEBI", "71570" ], [ "46", "SLM:000000212", "CHEBI", "73534" ], [ "47", "SLM:000000239", "CHEBI", "64612" ], [ "48", "SLM:000000240", "CHEBI", "64716" ], [ "49", "SLM:000000247", "CHEBI", "70828" ] ], "shape": { "columns": 3, "rows": 8571739 } }, "text/html": [ "
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Lipid IDmelted_columnvalue
0SLM:000000002CHEBI70846
1SLM:000000003CHEBI70771
2SLM:000000006CHEBI70829
3SLM:000000007CHEBI70775
4SLM:000000035CHEBI57817
............
8571734SLM:000782324Components_parsedNaN
8571735SLM:000782325Components_parsedNaN
8571736SLM:000782326Components_parsedNaN
8571737SLM:000782327Components_parsedNaN
8571738SLM:000782328Components_parsedNaN
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8571739 rows × 3 columns

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" ], "text/plain": [ " Lipid ID melted_column value\n", "0 SLM:000000002 CHEBI 70846\n", "1 SLM:000000003 CHEBI 70771\n", "2 SLM:000000006 CHEBI 70829\n", "3 SLM:000000007 CHEBI 70775\n", "4 SLM:000000035 CHEBI 57817\n", "... ... ... ...\n", "8571734 SLM:000782324 Components_parsed NaN\n", "8571735 SLM:000782325 Components_parsed NaN\n", "8571736 SLM:000782326 Components_parsed NaN\n", "8571737 SLM:000782327 Components_parsed NaN\n", "8571738 SLM:000782328 Components_parsed NaN\n", "\n", "[8571739 rows x 3 columns]" ] }, "execution_count": 9, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_edges = pd.melt(df_swisslipids, #df_swisslipids_splitexp\n", " id_vars=['Lipid ID'], \n", " value_vars=['CHEBI','LIPID MAPS','HMDB','MetaNetX','PMID','Lipid class*','Abbreviation*','Synonyms*','Parent','Components*','Components_parsed'], \n", " var_name='melted_column', value_name='value')\n", "df_swisslipids_edges" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Because this melt operation also resulted in a large number of null values, which probably mean nothing to us in this case, we will drop instances where the value is null" ] }, { "cell_type": "code", "execution_count": 10, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "melted_column", "rawType": "object", "type": "string" }, { "name": "value", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "b3efc9fe-22f9-450b-9df7-c3d09c006db3", "rows": [ [ "0", "SLM:000000002", "CHEBI", "70846" ], [ "1", "SLM:000000003", "CHEBI", "70771" ], [ "2", "SLM:000000006", "CHEBI", "70829" ], [ "3", "SLM:000000007", "CHEBI", "70775" ], [ "4", "SLM:000000035", "CHEBI", "57817" ], [ "5", "SLM:000000042", "CHEBI", "17759" ], [ "6", "SLM:000000043", "CHEBI", "71550" ], [ "7", "SLM:000000044", "CHEBI", "71542" ], [ "8", "SLM:000000047", "CHEBI", "70826" ], [ "9", "SLM:000000048", "CHEBI", "70838" ], [ "10", "SLM:000000084", "CHEBI", "58332" ], [ "11", "SLM:000000101", "CHEBI", "60110" ], [ "12", "SLM:000000102", "CHEBI", "62237" ], [ "13", "SLM:000000119", "CHEBI", "57939" ], [ "14", "SLM:000000139", "CHEBI", "71541" ], [ "15", "SLM:000000140", "CHEBI", "71569" ], [ "16", "SLM:000000141", "CHEBI", "17585" ], [ "17", "SLM:000000147", "CHEBI", "71466" ], [ "18", "SLM:000000149", "CHEBI", "71464" ], [ "19", "SLM:000000178", "CHEBI", "71377" ], [ "20", "SLM:000000179", "CHEBI", "71375" ], [ "21", "SLM:000000180", "CHEBI", "71378" ], [ "22", "SLM:000000181", "CHEBI", "71380" ], [ "23", "SLM:000000182", "CHEBI", "71381" ], [ "24", "SLM:000000183", "CHEBI", "71385" ], [ "25", "SLM:000000184", "CHEBI", "71388" ], [ "26", "SLM:000000185", "CHEBI", "70938" ], [ "27", "SLM:000000186", "CHEBI", "70951" ], [ "28", "SLM:000000187", "CHEBI", "70911" ], [ "29", "SLM:000000188", "CHEBI", "70918" ], [ "30", "SLM:000000189", "CHEBI", "70920" ], [ "31", "SLM:000000190", "CHEBI", "71384" ], [ "32", "SLM:000000191", "CHEBI", "71386" ], [ "33", "SLM:000000193", "CHEBI", "17168" ], [ "34", "SLM:000000194", "CHEBI", "71581" ], [ "35", "SLM:000000195", "CHEBI", "18378" ], [ "36", "SLM:000000196", "CHEBI", "70903" ], [ "37", "SLM:000000197", "CHEBI", "70910" ], [ "38", "SLM:000000198", "CHEBI", "71379" ], [ "39", "SLM:000000199", "CHEBI", "70946" ], [ "40", "SLM:000000200", "CHEBI", "70939" ], [ "41", "SLM:000000201", "CHEBI", "70932" ], [ "42", "SLM:000000202", "CHEBI", "16125" ], [ "43", "SLM:000000209", "CHEBI", "67108" ], [ "44", "SLM:000000210", "CHEBI", "67109" ], [ "45", "SLM:000000211", "CHEBI", "71570" ], [ "46", "SLM:000000212", "CHEBI", "73534" ], [ "47", "SLM:000000239", "CHEBI", "64612" ], [ "48", "SLM:000000240", "CHEBI", "64716" ], [ "49", "SLM:000000247", "CHEBI", "70828" ] ], "shape": { "columns": 3, "rows": 4678499 } }, "text/html": [ "
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Lipid IDmelted_columnvalue
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3SLM:000000007CHEBI70775
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............
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" ], "text/plain": [ " Lipid ID melted_column value\n", "0 SLM:000000002 CHEBI 70846\n", "1 SLM:000000003 CHEBI 70771\n", "2 SLM:000000006 CHEBI 70829\n", "3 SLM:000000007 CHEBI 70775\n", "4 SLM:000000035 CHEBI 57817\n", "... ... ... ...\n", "8571494 SLM:000781997 Components_parsed SLM:000000856 (n-acyl)\n", "8571495 SLM:000781998 Components_parsed SLM:000389154 (n-acyl)\n", "8571496 SLM:000781999 Components_parsed SLM:000485643 (n-acyl)\n", "8571497 SLM:000782000 Components_parsed SLM:000485644 (n-acyl)\n", "8571498 SLM:000782001 Components_parsed SLM:000485645 (n-acyl)\n", "\n", "[4678499 rows x 3 columns]" ] }, "execution_count": 10, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_edges = df_swisslipids_edges.dropna(subset='value')\n", "df_swisslipids_edges" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "There are still some things we need to tidy up so that it is in a suitable format for OnionNet" ] }, { "cell_type": "code", "execution_count": 11, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "fbc85b1b-f003-4b39-a6cc-3cad7c5f0fde", "rows": [ [ "0", "swisslipids", "SLM:000000002", "sl_chebi", "70846" ], [ "1", "swisslipids", "SLM:000000003", "sl_chebi", "70771" ], [ "2", "swisslipids", "SLM:000000006", "sl_chebi", "70829" ], [ "3", "swisslipids", "SLM:000000007", "sl_chebi", "70775" ], [ "4", "swisslipids", "SLM:000000035", "sl_chebi", "57817" ], [ "5", "swisslipids", "SLM:000000042", "sl_chebi", "17759" ], [ "6", "swisslipids", "SLM:000000043", "sl_chebi", "71550" ], [ "7", "swisslipids", "SLM:000000044", "sl_chebi", "71542" ], [ "8", "swisslipids", "SLM:000000047", "sl_chebi", "70826" ], [ "9", "swisslipids", "SLM:000000048", "sl_chebi", "70838" ], [ "10", "swisslipids", "SLM:000000084", "sl_chebi", "58332" ], [ "11", "swisslipids", "SLM:000000101", "sl_chebi", "60110" ], [ "12", "swisslipids", "SLM:000000102", "sl_chebi", "62237" ], [ "13", "swisslipids", "SLM:000000119", "sl_chebi", "57939" ], [ "14", "swisslipids", "SLM:000000139", "sl_chebi", "71541" ], [ "15", "swisslipids", "SLM:000000140", "sl_chebi", "71569" ], [ "16", "swisslipids", "SLM:000000141", "sl_chebi", "17585" ], [ "17", "swisslipids", "SLM:000000147", "sl_chebi", "71466" ], [ "18", "swisslipids", "SLM:000000149", "sl_chebi", "71464" ], [ "19", "swisslipids", "SLM:000000178", "sl_chebi", "71377" ], [ "20", "swisslipids", "SLM:000000179", "sl_chebi", "71375" ], [ "21", "swisslipids", "SLM:000000180", "sl_chebi", "71378" ], [ "22", "swisslipids", "SLM:000000181", "sl_chebi", "71380" ], [ "23", "swisslipids", "SLM:000000182", "sl_chebi", "71381" ], [ "24", "swisslipids", "SLM:000000183", "sl_chebi", "71385" ], [ "25", "swisslipids", "SLM:000000184", "sl_chebi", "71388" ], [ "26", "swisslipids", "SLM:000000185", "sl_chebi", "70938" ], [ "27", "swisslipids", "SLM:000000186", "sl_chebi", "70951" ], [ "28", "swisslipids", "SLM:000000187", "sl_chebi", "70911" ], [ "29", "swisslipids", "SLM:000000188", "sl_chebi", "70918" ], [ "30", "swisslipids", "SLM:000000189", "sl_chebi", "70920" ], [ "31", "swisslipids", "SLM:000000190", "sl_chebi", "71384" ], [ "32", "swisslipids", "SLM:000000191", "sl_chebi", "71386" ], [ "33", "swisslipids", "SLM:000000193", "sl_chebi", "17168" ], [ "34", "swisslipids", "SLM:000000194", "sl_chebi", "71581" ], [ "35", "swisslipids", "SLM:000000195", "sl_chebi", "18378" ], [ "36", "swisslipids", "SLM:000000196", "sl_chebi", "70903" ], [ "37", "swisslipids", "SLM:000000197", "sl_chebi", "70910" ], [ "38", "swisslipids", "SLM:000000198", "sl_chebi", "71379" ], [ "39", "swisslipids", "SLM:000000199", "sl_chebi", "70946" ], [ "40", "swisslipids", "SLM:000000200", "sl_chebi", "70939" ], [ "41", "swisslipids", "SLM:000000201", "sl_chebi", "70932" ], [ "42", "swisslipids", "SLM:000000202", "sl_chebi", "16125" ], [ "43", "swisslipids", "SLM:000000209", "sl_chebi", "67108" ], [ "44", "swisslipids", "SLM:000000210", "sl_chebi", "67109" ], [ "45", "swisslipids", "SLM:000000211", "sl_chebi", "71570" ], [ "46", "swisslipids", "SLM:000000212", "sl_chebi", "73534" ], [ "47", "swisslipids", "SLM:000000239", "sl_chebi", "64612" ], [ "48", "swisslipids", "SLM:000000240", "sl_chebi", "64716" ], [ "49", "swisslipids", "SLM:000000247", "sl_chebi", "70828" ] ], "shape": { "columns": 4, "rows": 4678499 } }, "text/html": [ "
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source_layersource_idtarget_layertarget_id
0swisslipidsSLM:000000002sl_chebi70846
1swisslipidsSLM:000000003sl_chebi70771
2swisslipidsSLM:000000006sl_chebi70829
3swisslipidsSLM:000000007sl_chebi70775
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8571494swisslipidsSLM:000781997sl_components_parsedSLM:000000856 (n-acyl)
8571495swisslipidsSLM:000781998sl_components_parsedSLM:000389154 (n-acyl)
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" ], "text/plain": [ " source_layer source_id target_layer \\\n", "0 swisslipids SLM:000000002 sl_chebi \n", "1 swisslipids SLM:000000003 sl_chebi \n", "2 swisslipids SLM:000000006 sl_chebi \n", "3 swisslipids SLM:000000007 sl_chebi \n", "4 swisslipids SLM:000000035 sl_chebi \n", "... ... ... ... \n", "8571494 swisslipids SLM:000781997 sl_components_parsed \n", "8571495 swisslipids SLM:000781998 sl_components_parsed \n", "8571496 swisslipids SLM:000781999 sl_components_parsed \n", "8571497 swisslipids SLM:000782000 sl_components_parsed \n", "8571498 swisslipids SLM:000782001 sl_components_parsed \n", "\n", " target_id \n", "0 70846 \n", "1 70771 \n", "2 70829 \n", "3 70775 \n", "4 57817 \n", "... ... \n", "8571494 SLM:000000856 (n-acyl) \n", "8571495 SLM:000389154 (n-acyl) \n", "8571496 SLM:000485643 (n-acyl) \n", "8571497 SLM:000485644 (n-acyl) \n", "8571498 SLM:000485645 (n-acyl) \n", "\n", "[4678499 rows x 4 columns]" ] }, "execution_count": 11, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_edges = df_swisslipids_edges.copy()\n", "df_swisslipids_edges['source_layer'] = 'swisslipids'\n", "df_swisslipids_edges.rename(columns={'Lipid ID':'source_id', 'melted_column':'target_layer', 'value':'target_id'}, inplace=True)\n", "df_swisslipids_edges = df_swisslipids_edges[['source_layer','source_id','target_layer','target_id']]\n", "df_swisslipids_edges['target_layer'] = df_swisslipids_edges['target_layer'].map(lambda x: 'swisslipids' if x=='Lipid class*' else f\"sl_{str(x).replace(' ','').strip('*').lower()}\")\n", "#df_swisslipids_edges['target_layer'] = df_swisslipids_edges['target_layer'].map(lambda x: )\n", "df_swisslipids_edges" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "For rows where it is swisslipids to swisslipids, we actually want to correct this from target_layer to source_layer, because currently the target_layer in this case is actually the parent class, and ideally it would be better to have the parent point towards the children, so that way the root node should be the one with multiple outgoing edges and no incoming edges...\n", "\n", "Be sure to only run this once, otherwise it will switch back again..." ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "a2a3cb2f-4d94-47a7-89c1-78207df7f73c", "rows": [ [ "0", "swisslipids", "SLM:000000002", "sl_chebi", "70846" ], [ "1", "swisslipids", "SLM:000000003", "sl_chebi", "70771" ], [ "2", "swisslipids", "SLM:000000006", "sl_chebi", "70829" ], [ "3", "swisslipids", "SLM:000000007", "sl_chebi", "70775" ], [ "4", "swisslipids", "SLM:000000035", "sl_chebi", "57817" ], [ "5", "swisslipids", "SLM:000000042", "sl_chebi", "17759" ], [ "6", "swisslipids", "SLM:000000043", "sl_chebi", "71550" ], [ "7", "swisslipids", "SLM:000000044", "sl_chebi", "71542" ], [ "8", "swisslipids", "SLM:000000047", "sl_chebi", "70826" ], [ "9", "swisslipids", "SLM:000000048", "sl_chebi", "70838" ], [ "10", "swisslipids", "SLM:000000084", "sl_chebi", "58332" ], [ "11", "swisslipids", "SLM:000000101", "sl_chebi", "60110" ], [ "12", "swisslipids", "SLM:000000102", "sl_chebi", "62237" ], [ "13", "swisslipids", "SLM:000000119", "sl_chebi", "57939" ], [ "14", "swisslipids", "SLM:000000139", "sl_chebi", "71541" ], [ "15", "swisslipids", "SLM:000000140", "sl_chebi", "71569" ], [ "16", "swisslipids", "SLM:000000141", "sl_chebi", "17585" ], [ "17", "swisslipids", "SLM:000000147", "sl_chebi", "71466" ], [ "18", "swisslipids", "SLM:000000149", "sl_chebi", "71464" ], [ "19", "swisslipids", "SLM:000000178", "sl_chebi", "71377" ], [ "20", "swisslipids", "SLM:000000179", "sl_chebi", "71375" ], [ "21", "swisslipids", "SLM:000000180", "sl_chebi", "71378" ], [ "22", "swisslipids", "SLM:000000181", "sl_chebi", "71380" ], [ "23", "swisslipids", "SLM:000000182", "sl_chebi", "71381" ], [ "24", "swisslipids", "SLM:000000183", "sl_chebi", "71385" ], [ "25", "swisslipids", "SLM:000000184", "sl_chebi", "71388" ], [ "26", "swisslipids", "SLM:000000185", "sl_chebi", "70938" ], [ "27", "swisslipids", "SLM:000000186", "sl_chebi", "70951" ], [ "28", "swisslipids", "SLM:000000187", "sl_chebi", "70911" ], [ "29", "swisslipids", "SLM:000000188", "sl_chebi", "70918" ], [ "30", "swisslipids", "SLM:000000189", "sl_chebi", "70920" ], [ "31", "swisslipids", "SLM:000000190", "sl_chebi", "71384" ], [ "32", "swisslipids", "SLM:000000191", "sl_chebi", "71386" ], [ "33", "swisslipids", "SLM:000000193", "sl_chebi", "17168" ], [ "34", "swisslipids", "SLM:000000194", "sl_chebi", "71581" ], [ "35", "swisslipids", "SLM:000000195", "sl_chebi", "18378" ], [ "36", "swisslipids", "SLM:000000196", "sl_chebi", "70903" ], [ "37", "swisslipids", "SLM:000000197", "sl_chebi", "70910" ], [ "38", "swisslipids", "SLM:000000198", "sl_chebi", "71379" ], [ "39", "swisslipids", "SLM:000000199", "sl_chebi", "70946" ], [ "40", "swisslipids", "SLM:000000200", "sl_chebi", "70939" ], [ "41", "swisslipids", "SLM:000000201", "sl_chebi", "70932" ], [ "42", "swisslipids", "SLM:000000202", "sl_chebi", "16125" ], [ "43", "swisslipids", "SLM:000000209", "sl_chebi", "67108" ], [ "44", "swisslipids", "SLM:000000210", "sl_chebi", "67109" ], [ "45", "swisslipids", "SLM:000000211", "sl_chebi", "71570" ], [ "46", "swisslipids", "SLM:000000212", "sl_chebi", "73534" ], [ "47", "swisslipids", "SLM:000000239", "sl_chebi", "64612" ], [ "48", "swisslipids", "SLM:000000240", "sl_chebi", "64716" ], [ "49", "swisslipids", "SLM:000000247", "sl_chebi", "70828" ] ], "shape": { "columns": 4, "rows": 4678499 } 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source_layersource_idtarget_layertarget_id
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4678499 rows × 4 columns

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" ], "text/plain": [ " source_layer source_id target_layer \\\n", "0 swisslipids SLM:000000002 sl_chebi \n", "1 swisslipids SLM:000000003 sl_chebi \n", "2 swisslipids SLM:000000006 sl_chebi \n", "3 swisslipids SLM:000000007 sl_chebi \n", "4 swisslipids SLM:000000035 sl_chebi \n", "... ... ... ... \n", "8571494 swisslipids SLM:000781997 sl_components_parsed \n", "8571495 swisslipids SLM:000781998 sl_components_parsed \n", "8571496 swisslipids SLM:000781999 sl_components_parsed \n", "8571497 swisslipids SLM:000782000 sl_components_parsed \n", "8571498 swisslipids SLM:000782001 sl_components_parsed \n", "\n", " target_id \n", "0 70846 \n", "1 70771 \n", "2 70829 \n", "3 70775 \n", "4 57817 \n", "... ... \n", "8571494 SLM:000000856 (n-acyl) \n", "8571495 SLM:000389154 (n-acyl) \n", "8571496 SLM:000485643 (n-acyl) \n", "8571497 SLM:000485644 (n-acyl) \n", "8571498 SLM:000485645 (n-acyl) \n", "\n", "[4678499 rows x 4 columns]" ] }, "execution_count": 12, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Identify rows where both source_layer and target_layer are 'swisslipids'\n", "condition = (df_swisslipids_edges[\"source_layer\"] == \"swisslipids\") & (df_swisslipids_edges[\"target_layer\"] == \"swisslipids\")\n", "\n", "# Swap the columns for rows satisfying the condition\n", "df_swisslipids_edges.loc[condition, [\"source_layer\", \"source_id\", \"target_layer\", \"target_id\"]] = df_swisslipids_edges.loc[condition, [\"target_layer\", \"target_id\", \"source_layer\", \"source_id\"]].values\n", "\n", "# Output the modified DataFrame\n", "df_swisslipids_edges" ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "target_layer\n", "swisslipids 779247\n", "sl_abbreviation 776464\n", "sl_components 765323\n", "sl_components_parsed 765323\n", "sl_synonyms 548163\n", "sl_metanetx 505003\n", "sl_parent 493491\n", "sl_hmdb 26026\n", "sl_lipidmaps 12117\n", "sl_chebi 4276\n", "sl_pmid 3066\n", "Name: count, dtype: int64" ] }, "execution_count": 13, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_edges['target_layer'].value_counts()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now let's return to two items on our todo list:\n", "1. splitting values that have multi-identifiers\n", "2. trimming/parsing the components col" ] }, { "cell_type": "code", "execution_count": 14, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "67ddd033-3045-47a3-9d70-221c67dc4b23", "rows": [ [ "465", "swisslipids", "SLM:000000784", "sl_chebi", "74546 | 82922" ], [ "387185", "swisslipids", "SLM:000389154", "sl_chebi", "82731 | CHEBI:82731" ], [ "595221", "swisslipids", "SLM:000598072", "sl_chebi", "17336 | 83228" ], [ "3116996", "swisslipids", "SLM:000000002", "sl_pmid", " | 11443131 | 14685263 | 18390550 | 21325339 | 21926990 | 9603947" ], [ "3116999", "swisslipids", "SLM:000000007", "sl_pmid", "14685263 | 21926990 | 9603947" ], [ "3117000", "swisslipids", "SLM:000000035", "sl_pmid", "10652340 | 10702247 | 10751414 | 10802064 | 10900202 | 11694577 | 11923095 | 12034738 | 12105227 | 12411432 | 12764132 | 12815058 | 12869556 | 12912983 | 15328338 | 15692566 | 15823095 | 16753040 | 17977534 | 18165233 | 18541923 | 19372430 | 20068046 | 20110363 | 20139604 | 20207939 | 22038835 | 22144673 | 22661289 | 23530041 | 25345524 | 31916624 | 9353337 | 9556590 | 9677363 | 9726979 | 9804843" ], [ "3117001", "swisslipids", "SLM:000000042", "sl_pmid", "10329655 | 10344195 | 10786622 | 11230174 | 16563875 | 21632547 | 21749634 | 21813643 | 22891291 | 25017465 | 7560069 | 9465114 | 9634533" ], [ "3117002", "swisslipids", "SLM:000000043", "sl_pmid", "19531354 | 22505847" ], [ "3117003", "swisslipids", "SLM:000000044", "sl_pmid", "16529801 | 21749634 | 22170062 | 22505847" ], [ "3117004", "swisslipids", "SLM:000000047", "sl_pmid", "15340492 | 18390550 | 20360843" ], [ "3117005", "swisslipids", "SLM:000000048", "sl_pmid", "15340492 | 18390550 | 19933331 | 20360843" ], [ "3117006", "swisslipids", "SLM:000000084", "sl_pmid", "16547353 | 20485265 | 23623749 | 29253589 | 8557688 | 9407135 | 9462830 | 9880566" ], [ "3117007", "swisslipids", "SLM:000000101", "sl_pmid", "20485265 | 9880566" ], [ "3117008", "swisslipids", "SLM:000000102", "sl_pmid", "14573790 | 16547353 | 19244244 | 20485265 | 23150663 | 9462830" ], [ "3117009", "swisslipids", "SLM:000000119", "sl_pmid", "10751414 | 10802064 | 11018465 | 11923095 | 12411432 | 12815058 | 14570870 | 22633490 | 22784711 | 23180825 | 25345524 | 31916624 | 9334171 | 9353337 | 9464245 | 9677363 | 9726979" ], [ "3117010", "swisslipids", "SLM:000000139", "sl_pmid", "20843794 | 24244004" ], [ "3117012", "swisslipids", "SLM:000000141", "sl_pmid", "22385963 | 22633490 | 22784711 | 31916624" ], [ "3117013", "swisslipids", "SLM:000000147", "sl_pmid", "14634025 | 16527816 | 17015445 | 17626977 | 17655883 | 18227059 | 21562563 | 25596343 | 27637550" ], [ "3117014", "swisslipids", "SLM:000000149", "sl_pmid", "12824167 | 14634025 | 15655246 | 15760304 | 16527816 | 17015445 | 17655883 | 18227059 | 21562563 | 21801852 | 22825852 | 25423491 | 25596343 | 27637550" ], [ "3117029", "swisslipids", "SLM:000000193", "sl_pmid", "10344195 | 10786622 | 12133002 | 21813643 | 22505847 | 8798407 | 9894009" ], [ "3117038", "swisslipids", "SLM:000000202", "sl_pmid", "10692424 | 15070765 | 15220348 | 15262939 | 15671038 | 15834126 | 16106050 | 20071337 | 22633490 | 27274541 | 6833249 | 8399344 | 9553082 | 9989261" ], [ "3117043", "swisslipids", "SLM:000000239", "sl_pmid", "15897609 | 16478722 | 17890783 | 18629440 | 18772128 | 19000777 | 19014349 | 19454763 | 19506037 | 20485265 | 20727985 | 24097981 | 2445736 | 24706822 | 8898203 | 9132017 | 9575223" ], [ "3117044", "swisslipids", "SLM:000000240", "sl_pmid", "16547353 | 18434318 | 19075029 | 20485265 | 9132017 | 9462830" ], [ "3117046", "swisslipids", "SLM:000000249", "sl_pmid", "10672016 | 11694577 | 12851411 | 15588229 | 17890783 | 18772128 | 19075029 | 19318427 | 19372430" ], [ "3117051", "swisslipids", "SLM:000000261", "sl_pmid", "10848624 | 12055623 | 14685263 | 14976195 | 15044461 | 15588229 | 16478722 | 17237796 | 17401110 | 17449912 | 17982138 | 18037386 | 1847919 | 18629440 | 19000777 | 19014349 | 19454763 | 20332109 | 20727985 | 20736081 | 21614002 | 22822086 | 23532839 | 24097981 | 2445736 | 7654206 | 7654777 | 7912658 | 8530346 | 8576189 | 8618862 | 8757862 | 8898203 | 9132017" ], [ "3117052", "swisslipids", "SLM:000000262", "sl_pmid", "10336610 | 10685032 | 10888667 | 10931938 | 11022048 | 12181444 | 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9162045 | 9465114 | 9633819 | 9634533 | 9660774 | 9756920 | 9852097 | 9857049" ], [ "3117069", "swisslipids", "SLM:000000288", "sl_pmid", "17630785 | 17651430 | 18495818 | 21257778" ], [ "3117070", "swisslipids", "SLM:000000290", "sl_pmid", "17630785 | 18495818 | 20843794 | 21255593 | 21257778" ], [ "3117071", "swisslipids", "SLM:000000294", "sl_pmid", "14634025 | 16527816 | 16938887 | 17015445 | 17626977 | 17649977 | 17655883 | 18227059 | 18549450 | 18698000 | 20702771 | 21289075 | 21562563 | 25423491 | 25596343 | 27571266 | 27637550 | 32271712" ], [ "3117072", "swisslipids", "SLM:000000296", "sl_pmid", "10085124 | 10320809 | 10358058 | 10542053 | 10559269 | 10620324 | 10660572 | 10681567 | 10744668 | 10791960 | 10854433 | 10908295 | 10965849 | 11034610 | 11162607 | 11180564 | 11192938 | 11256953 | 11673457 | 11927584 | 12244105 | 12522102 | 12672805 | 12704195 | 14634044 | 14636062 | 14660610 | 14709560 | 15007068 | 15041462 | 15084647 | 15364545 | 15558016 | 15695510 | 15699031 | 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9392419" ], [ "3117079", "swisslipids", "SLM:000000303", "sl_pmid", "10026212 | 11581264 | 12437513 | 15060088 | 16262699 | 16684881 | 17202134 | 25066056 | 2690933 | 8806705 | 9392419" ], [ "3117080", "swisslipids", "SLM:000000304", "sl_pmid", "17202134 | 8806705" ], [ "3117081", "swisslipids", "SLM:000000305", "sl_pmid", "15060088 | 16684881 | 2690933" ], [ "3117082", "swisslipids", "SLM:000000307", "sl_pmid", "10026212 | 11581264 | 12437513 | 15060088 | 16262699 | 16684881 | 19933331 | 24531458 | 25066056 | 2690933" ], [ "3117084", "swisslipids", "SLM:000000309", "sl_pmid", "10666321 | 11181753 | 24531458" ], [ "3117085", "swisslipids", "SLM:000000310", "sl_pmid", "10666321 | 11181753 | 14766201 | 7639730" ], [ "3117086", "swisslipids", "SLM:000000311", "sl_pmid", "10544287 | 10672016 | 11328599 | 14766201 | 20149798 | 21525977 | 22178193 | 7639730" ], [ "3117087", "swisslipids", "SLM:000000313", "sl_pmid", "10544287 | 11328599 | 11784322 | 12618959 | 20149798 | 9630650" ], [ "3117088", "swisslipids", "SLM:000000314", "sl_pmid", "11784322 | 12618959 | 21285510 | 9630650" ], [ "3117089", "swisslipids", "SLM:000000315", "sl_pmid", "14567972 | 21285510 | 9811880" ] ], "shape": { "columns": 4, "rows": 30942 } }, "text/html": [ "
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source_layersource_idtarget_layertarget_id
465swisslipidsSLM:000000784sl_chebi74546 | 82922
387185swisslipidsSLM:000389154sl_chebi82731 | CHEBI:82731
595221swisslipidsSLM:000598072sl_chebi17336 | 83228
3116996swisslipidsSLM:000000002sl_pmid| 11443131 | 14685263 | 18390550 | 21325339 |...
3116999swisslipidsSLM:000000007sl_pmid14685263 | 21926990 | 9603947
...............
6199835swisslipidsSLM:000747954sl_synonyms1,2-di-(13-methyltetradecanoyl)-sn-glycero-3-c...
6199836swisslipidsSLM:000747955sl_synonyms1-(13-methyltetradecanoyl)-2-(15-methylhexadec...
6199918swisslipidsSLM:000748037sl_synonyms1-(15-methylhexadecanoyl)-2-(11-methyldodecano...
6199919swisslipidsSLM:000748038sl_synonyms1-(15-methylhexadecanoyl)-2-(13-methyltetradec...
6199920swisslipidsSLM:000748039sl_synonyms1,2-di-(15-methylhexadecanoyl)-sn-glycero-3-cy...
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30942 rows × 4 columns

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" ], "text/plain": [ " source_layer source_id target_layer \\\n", "465 swisslipids SLM:000000784 sl_chebi \n", "387185 swisslipids SLM:000389154 sl_chebi \n", "595221 swisslipids SLM:000598072 sl_chebi \n", "3116996 swisslipids SLM:000000002 sl_pmid \n", "3116999 swisslipids SLM:000000007 sl_pmid \n", "... ... ... ... \n", "6199835 swisslipids SLM:000747954 sl_synonyms \n", "6199836 swisslipids SLM:000747955 sl_synonyms \n", "6199918 swisslipids SLM:000748037 sl_synonyms \n", "6199919 swisslipids SLM:000748038 sl_synonyms \n", "6199920 swisslipids SLM:000748039 sl_synonyms \n", "\n", " target_id \n", "465 74546 | 82922 \n", "387185 82731 | CHEBI:82731 \n", "595221 17336 | 83228 \n", "3116996 | 11443131 | 14685263 | 18390550 | 21325339 |... \n", "3116999 14685263 | 21926990 | 9603947 \n", "... ... \n", "6199835 1,2-di-(13-methyltetradecanoyl)-sn-glycero-3-c... \n", "6199836 1-(13-methyltetradecanoyl)-2-(15-methylhexadec... \n", "6199918 1-(15-methylhexadecanoyl)-2-(11-methyldodecano... \n", "6199919 1-(15-methylhexadecanoyl)-2-(13-methyltetradec... \n", "6199920 1,2-di-(15-methylhexadecanoyl)-sn-glycero-3-cy... \n", "\n", "[30942 rows x 4 columns]" ] }, "execution_count": 14, "metadata": {}, "output_type": "execute_result" } ], "source": [ "edges_with_multilinks = df_swisslipids_edges[df_swisslipids_edges['target_id'].str.contains('|', regex=False, na=False)]\n", "edges_with_multilinks" ] }, { "cell_type": "code", "execution_count": 15, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "target_layer\n", "sl_synonyms 19853\n", "sl_abbreviation 9768\n", "sl_pmid 1318\n", "sl_chebi 3\n", "Name: count, dtype: int64" ] }, "execution_count": 15, "metadata": {}, "output_type": "execute_result" } ], "source": [ "edges_with_multilinks.value_counts('target_layer')" ] }, { "cell_type": "code", "execution_count": 16, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "5aa25430-8658-476b-9d97-b998a6d9bd6b", "rows": [ [ "0", "swisslipids", "SLM:000000784", "sl_chebi", "74546 " ], [ "1", "swisslipids", "SLM:000000784", "sl_chebi", " 82922" ], [ "2", "swisslipids", "SLM:000389154", "sl_chebi", "82731 " ], [ "3", "swisslipids", "SLM:000389154", "sl_chebi", " CHEBI:82731" ], [ "4", "swisslipids", "SLM:000598072", "sl_chebi", "17336 " ], [ "5", "swisslipids", "SLM:000598072", "sl_chebi", " 83228" ], [ "6", "swisslipids", "SLM:000000002", "sl_pmid", " " ], [ "7", "swisslipids", "SLM:000000002", "sl_pmid", " 11443131 " ], [ "8", "swisslipids", "SLM:000000002", "sl_pmid", " 14685263 " ], [ "9", "swisslipids", "SLM:000000002", "sl_pmid", 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source_layersource_idtarget_layertarget_id
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1swisslipidsSLM:000000784sl_chebi82922
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...............
68383swisslipidsSLM:000748037sl_synonymsCDP-DG(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:1(11Z))
68384swisslipidsSLM:000748038sl_synonyms1-(15-methylhexadecanoyl)-2-(13-methyltetradec...
68385swisslipidsSLM:000748038sl_synonymsCDP-DG(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:1(9Z))
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" ], "text/plain": [ " source_layer source_id target_layer \\\n", "0 swisslipids SLM:000000784 sl_chebi \n", "1 swisslipids SLM:000000784 sl_chebi \n", "2 swisslipids SLM:000389154 sl_chebi \n", "3 swisslipids SLM:000389154 sl_chebi \n", "4 swisslipids SLM:000598072 sl_chebi \n", "... ... ... ... \n", "68383 swisslipids SLM:000748037 sl_synonyms \n", "68384 swisslipids SLM:000748038 sl_synonyms \n", "68385 swisslipids SLM:000748038 sl_synonyms \n", "68386 swisslipids SLM:000748039 sl_synonyms \n", "68387 swisslipids SLM:000748039 sl_synonyms \n", "\n", " target_id \n", "0 74546 \n", "1 82922 \n", "2 82731 \n", "3 CHEBI:82731 \n", "4 17336 \n", "... ... \n", "68383 CDP-DG(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:1(11Z)) \n", "68384 1-(15-methylhexadecanoyl)-2-(13-methyltetradec... \n", "68385 CDP-DG(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:1(9Z)) \n", "68386 1,2-di-(15-methylhexadecanoyl)-sn-glycero-3-cy... \n", "68387 CDP-DG(22:6(4Z,7Z,10Z,13Z,16Z,19Z)/18:2(9Z,12Z)) \n", "\n", "[68380 rows x 4 columns]" ] }, "execution_count": 16, "metadata": {}, "output_type": "execute_result" } ], "source": [ "edges_with_multilinks_split = split_and_expand_large(edges_with_multilinks, \n", " split_col='target_id', \n", " expand_cols=['source_layer','source_id','target_layer'],\n", " delimiter='|').drop_duplicates()\n", "edges_with_multilinks_split" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "This is good, but we also need to remember the separators in the components column" ] }, { "cell_type": "code", "execution_count": 17, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "644ba23a-1022-4f28-b453-032d60171e67", "rows": [ [ "7013405", "swisslipids", "SLM:000000422", "sl_components", "SLM:000000418 (sn2) / SLM:000000510 (sn1)" ], [ "7013470", "swisslipids", "SLM:000000498", "sl_components", "SLM:000000296 (sn2) / SLM:000000826 (sn1)" ], [ "7013510", "swisslipids", "SLM:000000557", "sl_components", "SLM:000000510 (sn1) / SLM:000000826 (sn2)" ], [ "7013573", "swisslipids", "SLM:000000636", "sl_components", "SLM:000000418 (sn1) / SLM:000000510 (sn2)" ], [ "7013574", "swisslipids", "SLM:000000637", "sl_components", "SLM:000000418 (sn1) / SLM:000000826 (sn2)" ], [ "7013576", "swisslipids", "SLM:000000639", "sl_components", "SLM:000000418 (sn2) / SLM:000001095 (sn1)" ], [ "7013578", "swisslipids", "SLM:000000641", "sl_components", "SLM:000000418 (sn2) / SLM:000000826 (sn1)" ], [ "7013579", "swisslipids", "SLM:000000642", "sl_components", "SLM:000000418 (sn1) / SLM:000001095 (sn2)" ], [ "7013580", "swisslipids", "SLM:000000643", 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7013405swisslipidsSLM:000000422sl_componentsSLM:000000418 (sn2) / SLM:000000510 (sn1)
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...............
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" ], "text/plain": [ " source_layer source_id target_layer \\\n", "7013405 swisslipids SLM:000000422 sl_components \n", "7013470 swisslipids SLM:000000498 sl_components \n", "7013510 swisslipids SLM:000000557 sl_components \n", "7013573 swisslipids SLM:000000636 sl_components \n", "7013574 swisslipids SLM:000000637 sl_components \n", "... ... ... ... \n", "8537662 swisslipids SLM:000748034 sl_components_parsed \n", "8537663 swisslipids SLM:000748035 sl_components_parsed \n", "8537664 swisslipids SLM:000748036 sl_components_parsed \n", "8537665 swisslipids SLM:000748037 sl_components_parsed \n", "8537666 swisslipids SLM:000748038 sl_components_parsed \n", "\n", " target_id \n", "7013405 SLM:000000418 (sn2) / SLM:000000510 (sn1) \n", "7013470 SLM:000000296 (sn2) / SLM:000000826 (sn1) \n", "7013510 SLM:000000510 (sn1) / SLM:000000826 (sn2) \n", "7013573 SLM:000000418 (sn1) / SLM:000000510 (sn2) \n", "7013574 SLM:000000418 (sn1) / SLM:000000826 (sn2) \n", "... ... \n", "8537662 SLM:000000048 (sn1) / SLM:000001195 (sn2) \n", "8537663 SLM:000000048 (sn1) / SLM:000001196 (sn2) \n", "8537664 SLM:000000048 (sn1) / SLM:000000853 (sn2) \n", "8537665 SLM:000000048 (sn1) / SLM:000001197 (sn2) \n", "8537666 SLM:000000047 (sn2) / SLM:000000048 (sn1) \n", "\n", "[1417450 rows x 4 columns]" ] }, "execution_count": 17, "metadata": {}, "output_type": "execute_result" } ], "source": [ "edges_with_multilinks2 = df_swisslipids_edges[df_swisslipids_edges['target_id'].str.contains('/', regex=False, na=False) &\n", " df_swisslipids_edges['target_layer'].str.contains('sl_components', regex=False, na=False)]\n", "edges_with_multilinks2" ] }, { "cell_type": "code", "execution_count": 18, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "58fbeb0e-46c6-4b18-a080-062aabd6df34", "rows": [ [ "0", "swisslipids", "SLM:000000422", "sl_components", "SLM:000000418 (sn2) " ], [ "1", "swisslipids", "SLM:000000422", "sl_components", " SLM:000000510 (sn1)" ], [ "2", "swisslipids", "SLM:000000498", "sl_components", "SLM:000000296 (sn2) " ], [ "3", "swisslipids", "SLM:000000498", "sl_components", " SLM:000000826 (sn1)" ], [ "4", "swisslipids", "SLM:000000557", "sl_components", "SLM:000000510 (sn1) " ], [ "5", "swisslipids", "SLM:000000557", "sl_components", " SLM:000000826 (sn2)" ], [ "6", "swisslipids", "SLM:000000636", "sl_components", "SLM:000000418 (sn1) " ], [ "7", "swisslipids", "SLM:000000636", "sl_components", " SLM:000000510 (sn2)" ], [ "8", "swisslipids", "SLM:000000637", "sl_components", "SLM:000000418 (sn1) " ], [ "9", "swisslipids", "SLM:000000637", "sl_components", " SLM:000000826 (sn2)" ], [ "10", "swisslipids", "SLM:000000639", "sl_components", "SLM:000000418 (sn2) " ], [ "11", "swisslipids", "SLM:000000639", "sl_components", " SLM:000001095 (sn1)" ], [ "12", "swisslipids", "SLM:000000641", "sl_components", "SLM:000000418 (sn2) " ], [ "13", "swisslipids", "SLM:000000641", "sl_components", " SLM:000000826 (sn1)" ], [ "14", "swisslipids", "SLM:000000642", "sl_components", "SLM:000000418 (sn1) " ], [ "15", "swisslipids", "SLM:000000642", "sl_components", " SLM:000001095 (sn2)" ], [ "16", "swisslipids", "SLM:000000643", "sl_components", "SLM:000000418 (sn1) " ], [ "17", "swisslipids", "SLM:000000643", "sl_components", " SLM:000000825 (sn2)" ], [ "18", "swisslipids", "SLM:000000644", "sl_components", "SLM:000000418 (sn1) " ], [ "19", "swisslipids", "SLM:000000644", "sl_components", " SLM:000001199 (sn2)" ], [ "20", "swisslipids", "SLM:000000646", "sl_components", "SLM:000000418 (sn2) " ], [ "21", "swisslipids", "SLM:000000646", "sl_components", " SLM:000000829 (sn1)" ], [ "22", "swisslipids", "SLM:000000648", "sl_components", "SLM:000000418 (sn2) " ], [ "23", "swisslipids", "SLM:000000648", "sl_components", " SLM:000000825 (sn1)" ], [ "24", "swisslipids", "SLM:000000651", "sl_components", "SLM:000000418 (sn2) " ], [ "25", "swisslipids", "SLM:000000651", "sl_components", " SLM:000000510 (sn1)" ], [ "26", "swisslipids", "SLM:000000652", "sl_components", "SLM:000000411 (sn2) " ], [ "27", "swisslipids", "SLM:000000652", "sl_components", " SLM:000000510 (sn1)" ], [ "28", "swisslipids", "SLM:000000653", "sl_components", "SLM:000000411 (sn2) " ], [ "29", "swisslipids", "SLM:000000653", "sl_components", " SLM:000000510 (sn1)" ], [ "30", "swisslipids", "SLM:000000657", "sl_components", "SLM:000000418 (sn1) " ], [ "31", "swisslipids", "SLM:000000657", "sl_components", " SLM:000000510 (sn2)" ], [ "32", "swisslipids", "SLM:000000661", "sl_components", "SLM:000000411 (sn2) " ], [ "33", "swisslipids", "SLM:000000661", "sl_components", " SLM:000000510 (sn1)" ], [ "34", "swisslipids", "SLM:000000662", "sl_components", "SLM:000000418 (sn2) " ], [ "35", "swisslipids", "SLM:000000662", "sl_components", " SLM:000000510 (sn1)" ], [ "36", "swisslipids", "SLM:000000666", "sl_components", "SLM:000000418 (sn1) " ], [ "37", "swisslipids", "SLM:000000666", "sl_components", " SLM:000000829 (sn2)" ], [ "38", "swisslipids", "SLM:000000667", "sl_components", "SLM:000000510 (sn1) " ], [ "39", "swisslipids", "SLM:000000667", "sl_components", " SLM:000000719 (sn2)" ], [ "40", "swisslipids", "SLM:000000669", "sl_components", "SLM:000000510 (sn2) " ], [ "41", "swisslipids", "SLM:000000669", "sl_components", " SLM:000000719 (sn1)" ], [ "42", "swisslipids", "SLM:000000671", "sl_components", "SLM:000000418 (sn2) " ], [ "43", "swisslipids", "SLM:000000671", "sl_components", " SLM:000000826 (sn1)" ], [ "44", "swisslipids", "SLM:000000672", "sl_components", "SLM:000000510 (sn1) " ], [ "45", "swisslipids", "SLM:000000672", "sl_components", " SLM:000000826 (sn2)" ], [ "46", "swisslipids", "SLM:000000673", "sl_components", "SLM:000000510 (sn1) " ], [ "47", "swisslipids", "SLM:000000673", "sl_components", " SLM:000000825 (sn2)" ], [ "48", "swisslipids", "SLM:000000675", "sl_components", "SLM:000000418 (sn1) " ], [ "49", "swisslipids", "SLM:000000675", "sl_components", " SLM:000001205 (sn2)" ] ], "shape": { "columns": 4, "rows": 3592492 } }, "text/html": [ "
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source_layersource_idtarget_layertarget_id
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...............
3592487swisslipidsSLM:000748036sl_components_parsedSLM:000000853 (sn2)
3592488swisslipidsSLM:000748037sl_components_parsedSLM:000000048 (sn1)
3592489swisslipidsSLM:000748037sl_components_parsedSLM:000001197 (sn2)
3592490swisslipidsSLM:000748038sl_components_parsedSLM:000000047 (sn2)
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3592492 rows × 4 columns

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" ], "text/plain": [ " source_layer source_id target_layer \\\n", "0 swisslipids SLM:000000422 sl_components \n", "1 swisslipids SLM:000000422 sl_components \n", "2 swisslipids SLM:000000498 sl_components \n", "3 swisslipids SLM:000000498 sl_components \n", "4 swisslipids SLM:000000557 sl_components \n", "... ... ... ... \n", "3592487 swisslipids SLM:000748036 sl_components_parsed \n", "3592488 swisslipids SLM:000748037 sl_components_parsed \n", "3592489 swisslipids SLM:000748037 sl_components_parsed \n", "3592490 swisslipids SLM:000748038 sl_components_parsed \n", "3592491 swisslipids SLM:000748038 sl_components_parsed \n", "\n", " target_id \n", "0 SLM:000000418 (sn2) \n", "1 SLM:000000510 (sn1) \n", "2 SLM:000000296 (sn2) \n", "3 SLM:000000826 (sn1) \n", "4 SLM:000000510 (sn1) \n", "... ... \n", "3592487 SLM:000000853 (sn2) \n", "3592488 SLM:000000048 (sn1) \n", "3592489 SLM:000001197 (sn2) \n", "3592490 SLM:000000047 (sn2) \n", "3592491 SLM:000000048 (sn1) \n", "\n", "[3592492 rows x 4 columns]" ] }, "execution_count": 18, "metadata": {}, "output_type": "execute_result" } ], "source": [ "edges_with_multilinks2_split = split_and_expand_large(edges_with_multilinks2, \n", " split_col='target_id', \n", " expand_cols=['source_layer','source_id','target_layer'],\n", " delimiter='/').drop_duplicates()\n", "edges_with_multilinks2_split" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now let's also parse the brackets from the parsed components so that these can be linked directly to the other SLMs if needed" ] }, { "cell_type": "code", "execution_count": 19, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "92057d69-6f55-49de-806d-29c8f29072a2", "rows": [ [ "0", "swisslipids", "SLM:000000422", "sl_components", "SLM:000000418 (sn2) " ], [ "1", "swisslipids", "SLM:000000422", "sl_components", " SLM:000000510 (sn1)" ], [ "2", "swisslipids", "SLM:000000498", "sl_components", "SLM:000000296 (sn2) " ], [ "3", "swisslipids", "SLM:000000498", "sl_components", " SLM:000000826 (sn1)" ], [ "4", "swisslipids", "SLM:000000557", "sl_components", "SLM:000000510 (sn1) " ], [ "5", "swisslipids", "SLM:000000557", "sl_components", " SLM:000000826 (sn2)" ], [ "6", "swisslipids", "SLM:000000636", "sl_components", "SLM:000000418 (sn1) " ], [ "7", "swisslipids", "SLM:000000636", "sl_components", " SLM:000000510 (sn2)" ], [ "8", "swisslipids", "SLM:000000637", "sl_components", "SLM:000000418 (sn1) " ], [ "9", "swisslipids", "SLM:000000637", "sl_components", " SLM:000000826 (sn2)" ], [ "10", "swisslipids", "SLM:000000639", "sl_components", "SLM:000000418 (sn2) " ], [ "11", "swisslipids", "SLM:000000639", "sl_components", " SLM:000001095 (sn1)" ], [ "12", "swisslipids", "SLM:000000641", "sl_components", "SLM:000000418 (sn2) " ], [ "13", "swisslipids", "SLM:000000641", "sl_components", " SLM:000000826 (sn1)" ], [ "14", "swisslipids", "SLM:000000642", "sl_components", "SLM:000000418 (sn1) " ], [ "15", "swisslipids", "SLM:000000642", "sl_components", " SLM:000001095 (sn2)" ], [ "16", "swisslipids", "SLM:000000643", "sl_components", "SLM:000000418 (sn1) " ], [ "17", "swisslipids", "SLM:000000643", "sl_components", " SLM:000000825 (sn2)" ], [ "18", "swisslipids", "SLM:000000644", "sl_components", "SLM:000000418 (sn1) " ], [ "19", "swisslipids", "SLM:000000644", "sl_components", " SLM:000001199 (sn2)" ], [ "20", "swisslipids", "SLM:000000646", "sl_components", "SLM:000000418 (sn2) " ], [ "21", "swisslipids", "SLM:000000646", "sl_components", " SLM:000000829 (sn1)" ], [ "22", "swisslipids", "SLM:000000648", "sl_components", "SLM:000000418 (sn2) " ], [ "23", "swisslipids", "SLM:000000648", "sl_components", " SLM:000000825 (sn1)" ], [ "24", "swisslipids", "SLM:000000651", "sl_components", "SLM:000000418 (sn2) " ], [ "25", "swisslipids", "SLM:000000651", "sl_components", " SLM:000000510 (sn1)" ], [ "26", "swisslipids", "SLM:000000652", "sl_components", "SLM:000000411 (sn2) " ], [ "27", "swisslipids", "SLM:000000652", "sl_components", " SLM:000000510 (sn1)" ], [ "28", "swisslipids", "SLM:000000653", "sl_components", "SLM:000000411 (sn2) " ], [ "29", "swisslipids", "SLM:000000653", "sl_components", " SLM:000000510 (sn1)" ], [ "30", "swisslipids", "SLM:000000657", "sl_components", "SLM:000000418 (sn1) " ], [ "31", "swisslipids", "SLM:000000657", "sl_components", " SLM:000000510 (sn2)" ], [ "32", "swisslipids", "SLM:000000661", "sl_components", "SLM:000000411 (sn2) " ], [ "33", "swisslipids", "SLM:000000661", "sl_components", " SLM:000000510 (sn1)" ], [ "34", "swisslipids", "SLM:000000662", 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source_layersource_idtarget_layertarget_id
0swisslipidsSLM:000000422sl_componentsSLM:000000418 (sn2)
1swisslipidsSLM:000000422sl_componentsSLM:000000510 (sn1)
2swisslipidsSLM:000000498sl_componentsSLM:000000296 (sn2)
3swisslipidsSLM:000000498sl_componentsSLM:000000826 (sn1)
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...............
3592487swisslipidsSLM:000748036sl_components_parsedSLM:000000853
3592488swisslipidsSLM:000748037sl_components_parsedSLM:000000048
3592489swisslipidsSLM:000748037sl_components_parsedSLM:000001197
3592490swisslipidsSLM:000748038sl_components_parsedSLM:000000047
3592491swisslipidsSLM:000748038sl_components_parsedSLM:000000048
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" ], "text/plain": [ " source_layer source_id target_layer \\\n", "0 swisslipids SLM:000000422 sl_components \n", "1 swisslipids SLM:000000422 sl_components \n", "2 swisslipids SLM:000000498 sl_components \n", "3 swisslipids SLM:000000498 sl_components \n", "4 swisslipids SLM:000000557 sl_components \n", "... ... ... ... \n", "3592487 swisslipids SLM:000748036 sl_components_parsed \n", "3592488 swisslipids SLM:000748037 sl_components_parsed \n", "3592489 swisslipids SLM:000748037 sl_components_parsed \n", "3592490 swisslipids SLM:000748038 sl_components_parsed \n", "3592491 swisslipids SLM:000748038 sl_components_parsed \n", "\n", " target_id \n", "0 SLM:000000418 (sn2) \n", "1 SLM:000000510 (sn1) \n", "2 SLM:000000296 (sn2) \n", "3 SLM:000000826 (sn1) \n", "4 SLM:000000510 (sn1) \n", "... ... \n", "3592487 SLM:000000853 \n", "3592488 SLM:000000048 \n", "3592489 SLM:000001197 \n", "3592490 SLM:000000047 \n", "3592491 SLM:000000048 \n", "\n", "[3592492 rows x 4 columns]" ] }, "execution_count": 19, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Apply transformation only for rows where target_layer equals 'sl_components_parsed'\n", "mask = edges_with_multilinks2_split['target_layer'] == 'sl_components_parsed'\n", "edges_with_multilinks2_split.loc[mask, 'target_id'] = edges_with_multilinks2_split.loc[mask, 'target_id'].str.split('(').str[0].str.strip()\n", "edges_with_multilinks2_split" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now we need a way to change these original rows where they had multilinks and add back the corrected ones." ] }, { "cell_type": "code", "execution_count": 20, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "67c46587-b7ae-46e4-9fe0-fb40aaa7ee8c", "rows": [ [ "0", "swisslipids", "SLM:000000002", "sl_chebi", "70846" ], [ "1", "swisslipids", "SLM:000000003", "sl_chebi", "70771" ], [ "2", "swisslipids", "SLM:000000006", "sl_chebi", "70829" ], [ "3", "swisslipids", "SLM:000000007", "sl_chebi", "70775" ], [ "4", "swisslipids", "SLM:000000035", "sl_chebi", "57817" ], [ "5", "swisslipids", "SLM:000000042", "sl_chebi", "17759" ], [ "6", "swisslipids", "SLM:000000043", "sl_chebi", "71550" ], [ "7", "swisslipids", "SLM:000000044", "sl_chebi", "71542" ], [ "8", "swisslipids", "SLM:000000047", "sl_chebi", "70826" ], [ "9", "swisslipids", "SLM:000000048", "sl_chebi", "70838" ], [ "10", "swisslipids", "SLM:000000084", "sl_chebi", "58332" ], [ "11", "swisslipids", "SLM:000000101", "sl_chebi", "60110" ], [ "12", "swisslipids", "SLM:000000102", "sl_chebi", "62237" ], [ "13", "swisslipids", "SLM:000000119", "sl_chebi", "57939" ], [ "14", "swisslipids", "SLM:000000139", "sl_chebi", "71541" ], [ "15", "swisslipids", "SLM:000000140", "sl_chebi", "71569" ], [ "16", "swisslipids", "SLM:000000141", "sl_chebi", "17585" ], [ "17", "swisslipids", "SLM:000000147", "sl_chebi", "71466" ], [ "18", "swisslipids", "SLM:000000149", "sl_chebi", "71464" ], [ "19", "swisslipids", "SLM:000000178", "sl_chebi", "71377" ], [ "20", "swisslipids", "SLM:000000179", "sl_chebi", "71375" ], [ "21", "swisslipids", "SLM:000000180", "sl_chebi", "71378" ], [ "22", "swisslipids", "SLM:000000181", "sl_chebi", "71380" ], [ "23", "swisslipids", "SLM:000000182", "sl_chebi", "71381" ], [ "24", "swisslipids", "SLM:000000183", "sl_chebi", "71385" ], [ "25", "swisslipids", "SLM:000000184", "sl_chebi", "71388" ], [ "26", "swisslipids", "SLM:000000185", "sl_chebi", "70938" ], [ "27", "swisslipids", "SLM:000000186", "sl_chebi", "70951" ], [ "28", "swisslipids", "SLM:000000187", "sl_chebi", "70911" ], [ "29", "swisslipids", "SLM:000000188", "sl_chebi", "70918" ], [ "30", "swisslipids", "SLM:000000189", "sl_chebi", "70920" ], [ "31", "swisslipids", "SLM:000000190", "sl_chebi", "71384" ], [ "32", "swisslipids", "SLM:000000191", "sl_chebi", "71386" ], [ "33", "swisslipids", "SLM:000000193", "sl_chebi", "17168" ], [ "34", "swisslipids", "SLM:000000194", "sl_chebi", "71581" ], [ "35", "swisslipids", "SLM:000000195", "sl_chebi", "18378" ], [ "36", "swisslipids", "SLM:000000196", "sl_chebi", "70903" ], [ "37", "swisslipids", "SLM:000000197", "sl_chebi", "70910" ], [ "38", "swisslipids", "SLM:000000198", "sl_chebi", "71379" ], [ "39", "swisslipids", "SLM:000000199", "sl_chebi", "70946" ], [ "40", "swisslipids", "SLM:000000200", "sl_chebi", "70939" ], [ "41", "swisslipids", "SLM:000000201", "sl_chebi", "70932" ], [ "42", "swisslipids", "SLM:000000202", "sl_chebi", "16125" ], [ "43", "swisslipids", "SLM:000000209", "sl_chebi", "67108" ], [ "44", "swisslipids", "SLM:000000210", 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source_layersource_idtarget_layertarget_id
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1swisslipidsSLM:000000003sl_chebi70771
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6890974swisslipidsSLM:000748036sl_components_parsedSLM:000000853
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" ], "text/plain": [ " source_layer source_id target_layer target_id\n", "0 swisslipids SLM:000000002 sl_chebi 70846\n", "1 swisslipids SLM:000000003 sl_chebi 70771\n", "2 swisslipids SLM:000000006 sl_chebi 70829\n", "3 swisslipids SLM:000000007 sl_chebi 70775\n", "4 swisslipids SLM:000000035 sl_chebi 57817\n", "... ... ... ... ...\n", "6890974 swisslipids SLM:000748036 sl_components_parsed SLM:000000853\n", "6890975 swisslipids SLM:000748037 sl_components_parsed SLM:000000048\n", "6890976 swisslipids SLM:000748037 sl_components_parsed SLM:000001197\n", "6890977 swisslipids SLM:000748038 sl_components_parsed SLM:000000047\n", "6890978 swisslipids SLM:000748038 sl_components_parsed SLM:000000048\n", "\n", "[6890979 rows x 4 columns]" ] }, "execution_count": 20, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# Identify rows with multilinks (either '|' or '/' with the specific target_layer condition)\n", "mask_pipe = df_swisslipids_edges['target_id'].str.contains('|', regex=False, na=False)\n", "mask_slash = (\n", " df_swisslipids_edges['target_id'].str.contains('/', regex=False, na=False) &\n", " df_swisslipids_edges['target_layer'].str.contains('sl_components', regex=False, na=False)\n", ")\n", "mask_problem = mask_pipe | mask_slash\n", "\n", "# Remove these rows from the original df\n", "df_clean = df_swisslipids_edges[~mask_problem].copy()\n", "\n", "# Now, combine the cleaned df with the corrected edges dataframes.\n", "# These corrected dataframes are assumed to be: \n", "# - edges_with_multilinks_split\n", "# - edges_with_multilinks2_split\n", "df_swisslipids_edges = pd.concat([df_clean, edges_with_multilinks_split, edges_with_multilinks2_split], ignore_index=True)\n", "\n", "# (Optional) Drop any duplicate rows that might arise\n", "df_swisslipids_edges = df_swisslipids_edges.drop_duplicates()\n", "\n", "# df_final now contains the original \"good\" rows plus the corrected edges.\n", "df_swisslipids_edges" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now we will determine whether the edge is within the same layer (intralayer) or between different layers (interlayer)" ] }, { "cell_type": "code", "execution_count": 21, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" }, { "name": "interlayer", "rawType": "bool", "type": "boolean" } ], "conversionMethod": "pd.DataFrame", "ref": "37e1cb9f-a828-443c-b156-bbc4031fa717", "rows": [ [ "0", "swisslipids", "SLM:000000002", "sl_chebi", "70846", "True" ], [ "1", "swisslipids", "SLM:000000003", "sl_chebi", "70771", "True" ], [ "2", "swisslipids", "SLM:000000006", "sl_chebi", "70829", "True" ], [ "3", "swisslipids", "SLM:000000007", "sl_chebi", "70775", "True" ], [ "4", "swisslipids", "SLM:000000035", "sl_chebi", "57817", "True" ], [ "5", "swisslipids", "SLM:000000042", "sl_chebi", "17759", "True" ], [ "6", "swisslipids", "SLM:000000043", "sl_chebi", "71550", "True" ], [ "7", "swisslipids", "SLM:000000044", "sl_chebi", "71542", "True" ], [ "8", "swisslipids", "SLM:000000047", "sl_chebi", "70826", "True" ], [ "9", "swisslipids", "SLM:000000048", "sl_chebi", "70838", "True" ], [ "10", "swisslipids", "SLM:000000084", "sl_chebi", "58332", "True" ], [ "11", "swisslipids", "SLM:000000101", "sl_chebi", "60110", "True" ], [ "12", "swisslipids", "SLM:000000102", "sl_chebi", "62237", "True" ], [ "13", "swisslipids", "SLM:000000119", "sl_chebi", "57939", "True" ], [ "14", "swisslipids", "SLM:000000139", "sl_chebi", "71541", "True" ], [ "15", "swisslipids", "SLM:000000140", "sl_chebi", "71569", "True" ], [ "16", "swisslipids", "SLM:000000141", "sl_chebi", "17585", "True" ], [ "17", "swisslipids", "SLM:000000147", "sl_chebi", "71466", "True" ], [ "18", "swisslipids", "SLM:000000149", "sl_chebi", "71464", "True" ], [ "19", "swisslipids", "SLM:000000178", "sl_chebi", "71377", "True" ], [ "20", "swisslipids", "SLM:000000179", "sl_chebi", "71375", "True" ], [ "21", "swisslipids", "SLM:000000180", "sl_chebi", "71378", "True" ], [ "22", "swisslipids", "SLM:000000181", "sl_chebi", "71380", "True" ], [ "23", "swisslipids", "SLM:000000182", "sl_chebi", "71381", "True" ], [ "24", "swisslipids", "SLM:000000183", "sl_chebi", "71385", "True" ], [ "25", "swisslipids", "SLM:000000184", "sl_chebi", "71388", "True" ], [ "26", "swisslipids", "SLM:000000185", "sl_chebi", "70938", "True" ], [ "27", "swisslipids", "SLM:000000186", "sl_chebi", "70951", "True" ], [ "28", "swisslipids", "SLM:000000187", "sl_chebi", "70911", "True" ], [ "29", "swisslipids", "SLM:000000188", "sl_chebi", "70918", "True" ], [ "30", "swisslipids", "SLM:000000189", "sl_chebi", "70920", "True" ], [ "31", "swisslipids", "SLM:000000190", "sl_chebi", "71384", "True" ], [ "32", "swisslipids", "SLM:000000191", "sl_chebi", "71386", "True" ], [ "33", "swisslipids", "SLM:000000193", "sl_chebi", "17168", "True" ], [ "34", "swisslipids", "SLM:000000194", "sl_chebi", "71581", "True" ], [ "35", "swisslipids", "SLM:000000195", "sl_chebi", "18378", "True" ], [ "36", "swisslipids", "SLM:000000196", "sl_chebi", "70903", "True" ], [ "37", "swisslipids", "SLM:000000197", "sl_chebi", "70910", "True" ], [ "38", "swisslipids", "SLM:000000198", "sl_chebi", "71379", "True" ], [ "39", "swisslipids", "SLM:000000199", "sl_chebi", "70946", "True" ], [ "40", "swisslipids", "SLM:000000200", "sl_chebi", "70939", "True" ], [ "41", "swisslipids", "SLM:000000201", "sl_chebi", "70932", "True" ], [ "42", "swisslipids", "SLM:000000202", "sl_chebi", "16125", "True" ], [ "43", "swisslipids", "SLM:000000209", "sl_chebi", "67108", "True" ], [ "44", "swisslipids", "SLM:000000210", "sl_chebi", "67109", "True" ], [ "45", "swisslipids", "SLM:000000211", "sl_chebi", "71570", "True" ], [ "46", "swisslipids", "SLM:000000212", "sl_chebi", "73534", "True" ], [ "47", "swisslipids", "SLM:000000239", "sl_chebi", "64612", "True" ], [ "48", "swisslipids", "SLM:000000240", "sl_chebi", "64716", "True" ], [ "49", "swisslipids", "SLM:000000247", "sl_chebi", "70828", "True" ] ], "shape": { "columns": 5, "rows": 6890979 } }, "text/html": [ "
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source_layersource_idtarget_layertarget_idinterlayer
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..................
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6890979 rows × 5 columns

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" ], "text/plain": [ " source_layer source_id target_layer target_id \\\n", "0 swisslipids SLM:000000002 sl_chebi 70846 \n", "1 swisslipids SLM:000000003 sl_chebi 70771 \n", "2 swisslipids SLM:000000006 sl_chebi 70829 \n", "3 swisslipids SLM:000000007 sl_chebi 70775 \n", "4 swisslipids SLM:000000035 sl_chebi 57817 \n", "... ... ... ... ... \n", "6890974 swisslipids SLM:000748036 sl_components_parsed SLM:000000853 \n", "6890975 swisslipids SLM:000748037 sl_components_parsed SLM:000000048 \n", "6890976 swisslipids SLM:000748037 sl_components_parsed SLM:000001197 \n", "6890977 swisslipids SLM:000748038 sl_components_parsed SLM:000000047 \n", "6890978 swisslipids SLM:000748038 sl_components_parsed SLM:000000048 \n", "\n", " interlayer \n", "0 True \n", "1 True \n", "2 True \n", "3 True \n", "4 True \n", "... ... \n", "6890974 True \n", "6890975 True \n", "6890976 True \n", "6890977 True \n", "6890978 True \n", "\n", "[6890979 rows x 5 columns]" ] }, "execution_count": 21, "metadata": {}, "output_type": "execute_result" } ], "source": [ "def assess_edge_layertype(df):\n", " interlayer = df['source_layer']!=df['target_layer']\n", " df['interlayer'] = interlayer\n", " return df \n", "\n", "df_swisslipids_edges = assess_edge_layertype(df_swisslipids_edges)\n", "df_swisslipids_edges" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now we will build the node df" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "### Building the node df" ] }, { "cell_type": "code", "execution_count": 22, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "layer", "rawType": "object", "type": "string" }, { "name": "node_id", "rawType": "object", "type": "string" } ], "conversionMethod": "pd.DataFrame", "ref": "bfb02202-d902-465c-8a57-c7ea9e976634", "rows": [ [ "0", "swisslipids", "SLM:000000002" ], [ "1", "swisslipids", "SLM:000000003" ], [ "2", "swisslipids", "SLM:000000006" ], [ "3", "swisslipids", "SLM:000000007" ], [ "4", "swisslipids", "SLM:000000035" ], [ "5", "swisslipids", "SLM:000000042" ], [ "6", "swisslipids", "SLM:000000043" ], [ "7", "swisslipids", "SLM:000000044" ], [ "8", "swisslipids", "SLM:000000047" ], [ "9", "swisslipids", "SLM:000000048" ], [ "10", "swisslipids", "SLM:000000084" ], [ "11", "swisslipids", "SLM:000000101" ], [ "12", "swisslipids", "SLM:000000102" ], [ "13", "swisslipids", "SLM:000000119" ], [ "14", "swisslipids", "SLM:000000139" ], [ "15", "swisslipids", "SLM:000000140" ], [ "16", "swisslipids", "SLM:000000141" ], [ "17", "swisslipids", "SLM:000000147" ], [ "18", "swisslipids", "SLM:000000149" ], [ "19", "swisslipids", "SLM:000000178" ], [ "20", "swisslipids", "SLM:000000179" ], [ "21", "swisslipids", "SLM:000000180" ], [ "22", "swisslipids", "SLM:000000181" ], [ "23", "swisslipids", "SLM:000000182" ], [ "24", "swisslipids", "SLM:000000183" ], [ "25", "swisslipids", "SLM:000000184" ], [ "26", "swisslipids", "SLM:000000185" ], [ "27", "swisslipids", "SLM:000000186" ], [ "28", "swisslipids", "SLM:000000187" ], [ "29", "swisslipids", "SLM:000000188" ], [ "30", "swisslipids", "SLM:000000189" ], [ "31", "swisslipids", "SLM:000000190" ], [ "32", "swisslipids", "SLM:000000191" ], [ "33", "swisslipids", "SLM:000000193" ], [ "34", "swisslipids", "SLM:000000194" ], [ "35", "swisslipids", "SLM:000000195" ], [ "36", "swisslipids", "SLM:000000196" ], [ "37", "swisslipids", "SLM:000000197" ], [ "38", "swisslipids", "SLM:000000198" ], [ "39", "swisslipids", "SLM:000000199" ], [ "40", "swisslipids", "SLM:000000200" ], [ "41", "swisslipids", "SLM:000000201" ], [ "42", "swisslipids", "SLM:000000202" ], [ "43", "swisslipids", "SLM:000000209" ], [ "44", "swisslipids", "SLM:000000210" ], [ "45", "swisslipids", "SLM:000000211" ], [ "46", "swisslipids", "SLM:000000212" ], [ "47", "swisslipids", "SLM:000000239" ], [ "48", "swisslipids", "SLM:000000240" ], [ "49", "swisslipids", "SLM:000000247" ] ], "shape": { "columns": 2, "rows": 13781958 } }, "text/html": [ "
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layernode_id
0swisslipidsSLM:000000002
1swisslipidsSLM:000000003
2swisslipidsSLM:000000006
3swisslipidsSLM:000000007
4swisslipidsSLM:000000035
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13781954sl_components_parsedSLM:000000048
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13781956sl_components_parsedSLM:000000047
13781957sl_components_parsedSLM:000000048
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13781958 rows × 2 columns

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" ], "text/plain": [ " layer node_id\n", "0 swisslipids SLM:000000002\n", "1 swisslipids SLM:000000003\n", "2 swisslipids SLM:000000006\n", "3 swisslipids SLM:000000007\n", "4 swisslipids SLM:000000035\n", "... ... ...\n", "13781953 sl_components_parsed SLM:000000853\n", "13781954 sl_components_parsed SLM:000000048\n", "13781955 sl_components_parsed SLM:000001197\n", "13781956 sl_components_parsed SLM:000000047\n", "13781957 sl_components_parsed SLM:000000048\n", "\n", "[13781958 rows x 2 columns]" ] }, "execution_count": 22, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_nodes = create_nodedf_from_edgedf(edge_df=df_swisslipids_edges, props=['layer', 'id'], cols=['layer', 'node_id'])\n", "df_swisslipids_nodes" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Let's also see how many are duplicates" ] }, { "cell_type": "code", "execution_count": 23, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "layer node_id \n", "swisslipids SLM:000000353 132660\n", " SLM:000000377 98800\n", " SLM:000000102 80218\n", " SLM:000117148 46826\n", " SLM:000000400 38525\n", " ... \n", "sl_metanetx MNXM311776 1\n", " MNXM311777 1\n", " MNXM311778 1\n", " MNXM311779 1\n", "swisslipids SLM:000782332 1\n", "Name: count, Length: 2783345, dtype: int64" ] }, "execution_count": 23, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_nodes.value_counts(dropna=True)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now let's merge the nodes with the information from earlier to create richer node attributes" ] }, { "cell_type": "code", "execution_count": 24, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "layer", "rawType": "object", "type": "string" }, { "name": "node_id", "rawType": "object", "type": "string" }, { "name": "Lipid ID", "rawType": "object", "type": 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" ], "text/plain": [ " layer node_id Lipid ID Level Name \\\n", "0 sl_abbreviation (5S)-HpHEPE NaN NaN NaN \n", "1 sl_abbreviation 15-KETE NaN NaN NaN \n", "2 sl_abbreviation (10,11S,12R)-TriHETrE NaN NaN NaN \n", "3 sl_abbreviation (10R)-H-(11S,12S)-EpETrE NaN NaN NaN \n", "4 sl_abbreviation (10R)-H-(8S,9S)-EpETrE NaN NaN NaN \n", "... ... ... ... ... ... \n", "13781953 swisslipids SLM:000782330 NaN NaN NaN \n", "13781954 swisslipids SLM:000782331 NaN NaN NaN \n", "13781955 swisslipids SLM:000782331 NaN NaN NaN \n", "13781956 swisslipids SLM:000782331 NaN NaN NaN \n", "13781957 swisslipids SLM:000782332 NaN NaN NaN \n", "\n", " Abbreviation* Synonyms* Lipid class* Parent Components* ... \\\n", "0 NaN NaN NaN NaN NaN ... \n", "1 NaN NaN NaN NaN NaN ... \n", "2 NaN NaN NaN NaN NaN ... \n", "3 NaN NaN NaN NaN NaN ... \n", "4 NaN NaN NaN NaN NaN ... \n", "... ... ... ... ... ... ... \n", "13781953 NaN NaN NaN NaN NaN ... \n", "13781954 NaN NaN NaN NaN NaN ... \n", "13781955 NaN NaN NaN 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NaN \n", "13781954 NaN \n", "13781955 NaN \n", "13781956 NaN \n", "13781957 NaN \n", "\n", "[13781958 rows x 33 columns]" ] }, "execution_count": 24, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_nodes = pd.merge(df_swisslipids_nodes, df_swisslipids.assign(from_layer_col='swisslipids'),\n", " left_on=['layer','node_id'], right_on=['from_layer_col','Lipid ID'],\n", " how='outer')\n", "df_swisslipids_nodes" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "This has a lot of duplicates in it, so lets remove them, along with the from_layer_col which means nothing in this case and is just a relic of our join back with the initial df we used to create the edges (which could probably be tidied up)" ] }, { "cell_type": "code", "execution_count": 25, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "layer", "rawType": 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Exact m/z of [M+NH4]+ Exact m/z of [M-H]- \\\n", "0 NaN NaN ... NaN NaN \n", "1 NaN NaN ... NaN NaN \n", "2 NaN NaN ... NaN NaN \n", "3 NaN NaN ... NaN NaN \n", "4 NaN NaN ... NaN NaN \n", "... ... ... ... ... ... \n", "13781947 NaN NaN ... NaN NaN \n", "13781950 NaN NaN ... NaN NaN \n", "13781953 NaN NaN ... NaN NaN \n", "13781954 NaN NaN ... NaN NaN \n", "13781957 NaN NaN ... NaN NaN \n", "\n", " Exact m/z of [M+Cl]- Exact m/z of [M+OAc]- CHEBI LIPID MAPS \\\n", "0 NaN NaN NaN NaN \n", "1 NaN NaN NaN NaN \n", "2 NaN NaN NaN NaN \n", "3 NaN NaN NaN NaN \n", "4 NaN NaN NaN NaN \n", "... ... ... ... ... \n", "13781947 NaN NaN 167117 NaN \n", "13781950 NaN NaN NaN NaN \n", "13781953 NaN NaN NaN NaN \n", "13781954 NaN NaN NaN NaN \n", "13781957 NaN NaN NaN NaN \n", "\n", " HMDB MetaNetX PMID Components_parsed \n", "0 NaN NaN NaN NaN \n", "1 NaN NaN NaN NaN \n", "2 NaN NaN NaN NaN \n", "3 NaN NaN NaN NaN \n", "4 NaN NaN NaN NaN \n", "... ... ... ... ... \n", "13781947 NaN NaN NaN NaN \n", "13781950 NaN NaN NaN NaN \n", "13781953 NaN NaN NaN NaN \n", "13781954 NaN NaN NaN NaN \n", "13781957 NaN NaN NaN NaN \n", "\n", "[2783345 rows x 32 columns]" ] }, "execution_count": 25, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_nodes = df_swisslipids_nodes.drop_duplicates()\n", "df_swisslipids_nodes = df_swisslipids_nodes.drop(columns='from_layer_col')\n", "df_swisslipids_nodes" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now we have the nodes and edges dfs for swisslipids and understand how we have arrived at them. In reality you don't have to go through this process every time, LipiNet offers a convenient function to do just this if you are interested in this same network setup." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Using the LipiNet `parse_swisslipids` function\n", "\n", "The LipiNet `parse_swisslipids` function automatically runs through all of the same steps as we have just covered." ] }, { "cell_type": "code", "execution_count": 26, "metadata": {}, "outputs": [], "source": [ "from lipinet.parse_swisslipids import parse_swisslipids_data\n", "\n", "sl_results = parse_swisslipids_data(verbose=False)\n", "df_sl_nodes = sl_results['df_nodes']\n", "df_sl_edges = sl_results['df_edges']" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "We can also check to make sure these are equal here for an individual entry" ] }, { "cell_type": "code", "execution_count": 27, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "layer sl_abbreviation\n", "node_id (5S)-HpHEPE\n", "Lipid ID NaN\n", "Level NaN\n", "Name NaN\n", "Abbreviation* NaN\n", "Synonyms* NaN\n", "Lipid class* NaN\n", "Parent NaN\n", "Components* NaN\n", "SMILES (pH7.3) NaN\n", "InChI (pH7.3) NaN\n", "InChI key (pH7.3) NaN\n", "Formula (pH7.3) NaN\n", "Charge (pH7.3) NaN\n", "Mass (pH7.3) NaN\n", "Exact Mass (neutral form) NaN\n", "Exact m/z of [M.]+ NaN\n", "Exact m/z of [M+H]+ NaN\n", "Exact m/z of [M+K]+ NaN\n", "Exact m/z of [M+Na]+ NaN\n", "Exact m/z of [M+Li]+ NaN\n", "Exact m/z of [M+NH4]+ NaN\n", "Exact m/z of [M-H]- NaN\n", "Exact m/z of [M+Cl]- NaN\n", "Exact m/z of [M+OAc]- NaN\n", "CHEBI NaN\n", "LIPID MAPS NaN\n", "HMDB NaN\n", "MetaNetX NaN\n", "PMID NaN\n", "Components_parsed NaN\n", "Name: 0, dtype: object" ] }, "execution_count": 27, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_nodes.iloc[0]" ] }, { "cell_type": "code", "execution_count": 28, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "layer sl_abbreviation\n", "node_id (5S)-HpHEPE\n", "Lipid ID NaN\n", "Level NaN\n", "Name NaN\n", "Abbreviation* NaN\n", "Synonyms* NaN\n", "Lipid class* NaN\n", "Parent NaN\n", "Components* NaN\n", "SMILES (pH7.3) NaN\n", "InChI (pH7.3) NaN\n", "InChI key (pH7.3) NaN\n", "Formula (pH7.3) NaN\n", "Charge (pH7.3) NaN\n", "Mass (pH7.3) NaN\n", "Exact Mass (neutral form) NaN\n", "Exact m/z of [M.]+ NaN\n", "Exact m/z of [M+H]+ NaN\n", "Exact m/z of [M+K]+ NaN\n", "Exact m/z of [M+Na]+ NaN\n", "Exact m/z of [M+Li]+ NaN\n", "Exact m/z of [M+NH4]+ NaN\n", "Exact m/z of [M-H]- NaN\n", "Exact m/z of [M+Cl]- NaN\n", "Exact m/z of [M+OAc]- NaN\n", "CHEBI NaN\n", "LIPID MAPS NaN\n", "HMDB NaN\n", "MetaNetX NaN\n", "PMID NaN\n", "Components_parsed NaN\n", "Name: 0, dtype: object" ] }, "execution_count": 28, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_sl_nodes.iloc[0]" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "For the first entry it looks good, what about for the entire df? We can use the `pd.testing.assert_frame_equal` function to do this. \n", "\n", "First we will use a null test to test equality between `df_swisslipids_nodes` and `df_swisslipids_edges`, which should obviously be `False`." ] }, { "cell_type": "code", "execution_count": 29, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "DataFrame are different\n", "\n", "DataFrame shape mismatch\n", "[left]: (2783345, 32)\n", "[right]: (6890979, 5)\n" ] } ], "source": [ "try:\n", " pd.testing.assert_frame_equal(df_swisslipids_nodes, df_swisslipids_edges)\n", " print('DataFrames are equal')\n", "except AssertionError as e:\n", " print(e)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Now let's test between `df_swisslipids_nodes` and `df_sl_nodes`, which should hopefully be `True` and not throw an error. We will also test the edges df while we're at it too." ] }, { "cell_type": "code", "execution_count": 30, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "DataFrames for nodes are equal\n" ] } ], "source": [ "try:\n", " pd.testing.assert_frame_equal(df_swisslipids_nodes, df_sl_nodes)\n", " print('DataFrames for nodes are equal')\n", "except AssertionError as e:\n", " print(e)" ] }, { "cell_type": "code", "execution_count": 31, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "DataFrames for edges are equal\n" ] } ], "source": [ "try:\n", " pd.testing.assert_frame_equal(df_swisslipids_edges, df_sl_edges)\n", " print('DataFrames for edges are equal')\n", "except AssertionError as e:\n", " print(e)" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Great! It looks like both approaches achieve the same df. We will use these dfs in other parts of the package." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "If they are different, we can inspect the exact rows here" ] }, { "cell_type": "code", "execution_count": 32, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" }, { "name": "interlayer", "rawType": "bool", "type": "boolean" }, { "name": "_merge", "rawType": "category", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "9677ddca-be2a-49d2-b5af-c98220199a20", "rows": [], "shape": { "columns": 6, "rows": 0 } }, "text/html": [ "
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source_layersource_idtarget_layertarget_idinterlayer_merge
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" ], "text/plain": [ "Empty DataFrame\n", "Columns: [source_layer, source_id, target_layer, target_id, interlayer, _merge]\n", "Index: []" ] }, "execution_count": 32, "metadata": {}, "output_type": "execute_result" } ], "source": [ "diff = df_sl_edges.merge(df_swisslipids_edges, how='outer', indicator=True)\n", "diff_rows_edges = diff[diff['_merge'] != 'both']\n", "diff_rows_edges" ] }, { "cell_type": "code", "execution_count": 33, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "layer", "rawType": "object", "type": "string" }, { "name": "node_id", "rawType": "object", "type": "string" }, { "name": "Lipid ID", "rawType": "object", "type": "string" }, { "name": "Level", "rawType": "object", "type": "string" }, { "name": "Name", "rawType": "object", "type": "string" }, { "name": "Abbreviation*", "rawType": "object", "type": "string" }, { "name": "Synonyms*", "rawType": "object", "type": "string" }, { "name": "Lipid class*", "rawType": "object", "type": "string" }, { "name": "Parent", "rawType": "object", "type": "string" }, { "name": "Components*", "rawType": "object", "type": "string" }, { "name": "SMILES (pH7.3)", "rawType": "object", "type": "string" }, { "name": "InChI (pH7.3)", "rawType": "object", "type": "string" }, { "name": "InChI key (pH7.3)", "rawType": "object", "type": "string" }, { "name": "Formula (pH7.3)", "rawType": "object", "type": "string" }, { "name": "Charge (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Mass (pH7.3)", "rawType": "float64", "type": "float" }, { "name": "Exact Mass (neutral form)", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M.]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+H]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+K]+ ", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Na]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Li]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+NH4]+", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M-H]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+Cl]-", "rawType": "float64", "type": "float" }, { "name": "Exact m/z of [M+OAc]- ", "rawType": "float64", "type": "float" }, { "name": "CHEBI", "rawType": "object", "type": "string" }, { "name": "LIPID MAPS", "rawType": "object", "type": "string" }, { "name": "HMDB", "rawType": "object", "type": "string" }, { "name": "MetaNetX", "rawType": "object", "type": "string" }, { "name": "PMID", "rawType": "object", "type": "string" }, { "name": "Components_parsed", "rawType": "object", "type": "string" }, { "name": "_merge", "rawType": "category", "type": "unknown" } ], "conversionMethod": "pd.DataFrame", "ref": "8b347dca-4218-4074-afa1-2b057524fb75", "rows": [], "shape": { "columns": 33, "rows": 0 } }, "text/html": [ "
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" ], "text/plain": [ "Empty DataFrame\n", "Columns: [layer, node_id, Lipid ID, Level, Name, Abbreviation*, Synonyms*, Lipid class*, Parent, Components*, SMILES (pH7.3), InChI (pH7.3), InChI key (pH7.3), Formula (pH7.3), Charge (pH7.3), Mass (pH7.3), Exact Mass (neutral form), Exact m/z of [M.]+, Exact m/z of [M+H]+, Exact m/z of [M+K]+ , Exact m/z of [M+Na]+, Exact m/z of [M+Li]+, Exact m/z of [M+NH4]+, Exact m/z of [M-H]-, Exact m/z of [M+Cl]-, Exact m/z of [M+OAc]- , CHEBI, LIPID MAPS, HMDB, MetaNetX, PMID, Components_parsed, _merge]\n", "Index: []\n", "\n", "[0 rows x 33 columns]" ] }, "execution_count": 33, "metadata": {}, "output_type": "execute_result" } ], "source": [ "diff = df_sl_nodes.merge(df_swisslipids_nodes, how='outer', indicator=True)\n", "diff_rows_nodes = diff[diff['_merge'] != 'both']\n", "diff_rows_nodes" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "These should also be the same" ] }, { "cell_type": "code", "execution_count": 38, "metadata": {}, "outputs": [ { "data": { "application/vnd.microsoft.datawrangler.viewer.v0+json": { "columns": [ { "name": "index", "rawType": "int64", "type": "integer" }, { "name": "source_layer", "rawType": "object", "type": "string" }, { "name": "source_id", "rawType": "object", "type": "string" }, { "name": "target_layer", "rawType": "object", "type": "string" }, { "name": "target_id", "rawType": "object", "type": "string" }, { "name": "interlayer", "rawType": "bool", "type": "boolean" } ], "conversionMethod": "pd.DataFrame", "ref": "6c77d3c8-45d2-42d3-b6b6-58912fbccbc9", "rows": [ [ "1640", "swisslipids", "SLM:000389145", "sl_chebi", "18059", "True" ], [ "429400", "swisslipids", "SLM:000389145", "sl_metanetx", "MNXM12117", "True" ], [ "549344", "swisslipids", "SLM:000389145", "swisslipids", "SLM:000000436", "False" ], [ "549407", "swisslipids", "SLM:000389145", "swisslipids", "SLM:000000525", "False" ], [ "549887", "swisslipids", "SLM:000389145", "swisslipids", "SLM:000001193", "False" ], [ "665828", "swisslipids", "SLM:000389145", "swisslipids", "SLM:000117142", "False" ], [ "936914", "swisslipids", "SLM:000389145", "swisslipids", "SLM:000390054", "False" ], [ "1046948", "swisslipids", "SLM:000389145", "swisslipids", "SLM:000500463", "False" ], [ "1055230", "swisslipids", "SLM:000389145", "swisslipids", "SLM:000508860", "False" ], [ "1328368", "swisslipids", "SLM:000389145", "swisslipids", "SLM:000782283", "False" ] ], "shape": { "columns": 5, "rows": 10 } }, "text/html": [ "
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" ], "text/plain": [ " source_layer source_id target_layer target_id interlayer\n", "1640 swisslipids SLM:000389145 sl_chebi 18059 True\n", "429400 swisslipids SLM:000389145 sl_metanetx MNXM12117 True\n", "549344 swisslipids SLM:000389145 swisslipids SLM:000000436 False\n", "549407 swisslipids SLM:000389145 swisslipids SLM:000000525 False\n", "549887 swisslipids SLM:000389145 swisslipids SLM:000001193 False\n", "665828 swisslipids SLM:000389145 swisslipids SLM:000117142 False\n", "936914 swisslipids SLM:000389145 swisslipids SLM:000390054 False\n", "1046948 swisslipids SLM:000389145 swisslipids SLM:000500463 False\n", "1055230 swisslipids SLM:000389145 swisslipids SLM:000508860 False\n", "1328368 swisslipids SLM:000389145 swisslipids SLM:000782283 False" ] }, "execution_count": 39, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_swisslipids_edges[df_swisslipids_edges['source_id']=='SLM:000389145']" ] } ], "metadata": { "kernelspec": { "display_name": "graphtool", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.12.4" } }, "nbformat": 4, "nbformat_minor": 2 }